Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39930 722 / 0 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT4G09020 387 / 1e-126 ATISA3, ISA3 isoamylase 3 (.1) AT1G03310 223 / 8e-64 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT5G04360 87 / 1e-17 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1) AT5G03650 72 / 5e-13 SBE2.2 starch branching enzyme 2.2 (.1) AT2G36390 67 / 1e-11 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT3G20440 63 / 4e-10 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021586 [exp] 1009 / 0 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10036474 [exp] 295 / 9e-91 AT4G09020 1005 / 0.0 isoamylase 3 (.1) Lus10000661 [exp] 204 / 3e-57 AT1G03310 848 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10027999 [exp] 201 / 6e-56 AT1G03310 833 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10038675 [exp] 73 / 4e-13 AT5G04360 1200 / 0.0 PULLULANASE 1, limit dextrinase (.1) Lus10023878 [exp] 67 / 3e-11 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10000912 [exp] 67 / 3e-11 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10014382 [exp] 65 / 1e-10 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10012264 [exp] 56 / 8e-08 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132500 [exp] 777 / 0 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.006G070800 [exp] 776 / 0 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 382 / 2e-124 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.002G219900 [exp] 227 / 3e-65 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Potri.010G229300 [exp] 77 / 1e-14 AT5G04360 1399 / 0.0 PULLULANASE 1, limit dextrinase (.1) Potri.001G359200 [exp] 67 / 1e-11 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.006G115100 [exp] 65 / 8e-11 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.005G251000 [exp] 53 / 4e-07 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10017150 pacid=23167491 polypeptide=Lus10017150 locus=Lus10017150.g ID=Lus10017150.BGIv1.0 annot-version=v1.0 ATGGAGTTGATTCACTCTGCTTCCCGCTCCCTATTCCTTCCCAAATTAACTCTCCACTCTCCAAGCTCTTTGGGAGGAGTAAGGACGACGAATTCCGTAC CTTCTCAACTTGTCTCTATAACCGATCCTCATACGAATTGTCCCCAGAGGATTTTCATAAGTGCGGCAAGGGAGGCCAGTGTAGAGATCTCAGAGCCTGA CCTGGTCGTGCGAGAGCGGAAATTGAGGTGGTTTCAAGTTTCCCAAGGGCGTCCCGCTCCGTTTGGTGCCACCGCCCGCGACGGTGGTGTCAACTTCTCC GTGTATTCTTCCAATGCCGCTTCTGCTACTCTCTGCTTGATTTCTAAGTCTGATTTGTCTGAGGGTAGAGTGACCGAGGAGATTCCTCTTGATCCTGTTG CTAACAAGACAGGCGACACTTGGCATGCATTTCTTCAAGGCGATTTCAGGGATATCCTATACGGTTACCGTTTTGATGGAGAGTTTTCTCCTGAAAATGG ACATTACTTTGATTCTTCAAAGACTATCTTGGATCCTTACGCCAAAGCAGTTGTATCCAGAGATGAATTCGGTGTCTTAGCCGCAAACGATAATTGCTGG CCGCAAATGGCGTGCATGATACCATCCGCTGAAGATGAGTTTGACTGGGAAGGAGATTTGCCACTGCAGTATCCCCAGAAAGATTTAATTATATACGAGA TGCATGTTCGAGGGTATACACAGCACGAGTCAAGCGGAGCTGAAAATCCTGGTACTTATCTAGGCGTTGTGGAAAAGCTTGATCACTTAAAAGACCTTGG TGTGAATTGCATAGAATTAATGCCATGCCATGAATTCAATGAGTTGGAGTACTACAAGTACAATTCCGTGATGGGTGATTACAAAATTAACTTTTGGGGA TATTCAACAATCAATTTCTTTTCACCAATGACAAGATATGCTTCTACTGGAACACGTAATTGTGGCCATGATGCAGTACATGAATTCAAGCTTCTCGTTA GAGAAGCACATAAGCGAGGAATTGAGGTGTTGATGGACGTTGTTTTCAATCACACCGCTGAAGGAAATGAGAAAGGGCCCACCCTTTCTTTCAGAGGGCT TGACAACAGTGTCTACTACATGGTTGCTCCCAAGGGAGAGTTCTATAATTATTCCGGCTGTGGTAATACATTCAACTGTAATCATCCTGTTGTACGCCAA TTCATAGTTGACTGCTTAAGATATTGGGTAATGGAAATGCATGTAGATGGCTTTCGCTTTGATCTTGCTTCGATTATGACAAGAGGCAGTAGTCTATGGG ATGCTGCTAATGTATTTGGAAGTCCACAAGAAGGTGACTTGTTGACTACGGGAACACCTCTTGGCATCCCCCCACTGATTGACATGATAAGCAATGATCC GATACTTTGTGACGTAAAGCTTATTGCAGAAGCGTGGGATGCTGGAGGCTTGTATCAAGTTGGTGCATTTCCTCATTGGCATATTTGGTCAGAGTGGAAT GGGAAGGTCAGCATAGGATACTCTCCTATTGTTCTGAATATTACATGTCATAAATCTAGTTGA
AA sequence Show only first row Show all	>Lus10017150 pacid=23167491 polypeptide=Lus10017150 locus=Lus10017150.g ID=Lus10017150.BGIv1.0 annot-version=v1.0 MELIHSASRSLFLPKLTLHSPSSLGGVRTTNSVPSQLVSITDPHTNCPQRIFISAAREASVEISEPDLVVRERKLRWFQVSQGRPAPFGATARDGGVNFS VYSSNAASATLCLISKSDLSEGRVTEEIPLDPVANKTGDTWHAFLQGDFRDILYGYRFDGEFSPENGHYFDSSKTILDPYAKAVVSRDEFGVLAANDNCW PQMACMIPSAEDEFDWEGDLPLQYPQKDLIIYEMHVRGYTQHESSGAENPGTYLGVVEKLDHLKDLGVNCIELMPCHEFNELEYYKYNSVMGDYKINFWG YSTINFFSPMTRYASTGTRNCGHDAVHEFKLLVREAHKRGIEVLMDVVFNHTAEGNEKGPTLSFRGLDNSVYYMVAPKGEFYNYSGCGNTFNCNHPVVRQ FIVDCLRYWVMEMHVDGFRFDLASIMTRGSSLWDAANVFGSPQEGDLLTTGTPLGIPPLIDMISNDPILCDVKLIAEAWDAGGLYQVGAFPHWHIWSEWN GKVSIGYSPIVLNITCHKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	0	1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	1.4	0.9479
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10003790 [exp]	1.7	0.9423
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	2.8	0.9460
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	2.8	0.9420
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10032647 [exp]	4.2	0.9387
AT3G22690			unknown protein		Lus10039355 [exp]	5.8	0.9197
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	6.9	0.9339
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010771 [exp]	7.7	0.9166
AT4G11970			YTH family protein (.1.2.3)		Lus10006706 [exp]	7.7	0.9243
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040049 [exp]	7.9	0.9348

Compare expression of checked genes

Lus10017150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.