Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19490 513 / 0 recA DNA recombination family protein (.1) AT3G10140 285 / 1e-92 RECA3 RECA homolog 3 (.1) AT3G32920 276 / 8e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G79050 273 / 2e-87 recA DNA recombination family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021585 [exp] 719 / 0 AT2G19490 545 / 0.0 recA DNA recombination family protein (.1) Lus10018037 [exp] 292 / 2e-94 AT3G10140 385 / 2e-131 RECA homolog 3 (.1) Lus10042033 [exp] 287 / 8e-94 AT3G10140 378 / 4e-130 RECA homolog 3 (.1) Lus10026204 [exp] 276 / 8e-89 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2) Lus10042462 [exp] 276 / 8e-89 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148700 [exp] 544 / 0 AT2G19490 535 / 0.0 recA DNA recombination family protein (.1) Potri.018G067900 [exp] 526 / 0 AT2G19490 547 / 0.0 recA DNA recombination family protein (.1) Potri.016G057700 [exp] 304 / 2e-100 AT3G10140 423 / 2e-147 RECA homolog 3 (.1) Potri.006G048000 [exp] 298 / 5e-98 AT3G10140 427 / 5e-149 RECA homolog 3 (.1) Potri.001G438900 [exp] 259 / 3e-82 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00154 [flax] [poplar] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Lus10017151 pacid=23167443 polypeptide=Lus10017151 locus=Lus10017151.g ID=Lus10017151.BGIv1.0 annot-version=v1.0 ATGGCGAGGCAACTTCTCCGGAACACTTTGTCTCTCAAGTCTTTTCTCGTACCAGAGGGATTGTGCGGAGGAGTTTTCGGAACATCTCGCGTCTGCAACT TTGCCACTAAAGTAGGTCTGTTTTGCTCTATTGAAGGAAGAAGAAAATCCAAGTCCGATGGAAGTGACTCTAGTGAGGATGATTTGTCAAAGAGAGAGGT AGTTCTACAACAAGCTATTGATCATATTAATAGCACATTTGGGAAGGGATCTATTATGTGGTTTGGACGGGCTATTGCTCCAAGAAATACTCCAGTTGTG TCCACTGGTTCTCTCCTTCTTGACGTAGCTCTTGGAACTGGTGGGTATCCAAAGGGACGTGTGGTAGAGATTTATGGTCCAGAGGCTTCTGGAAAAACTA CTCTTGCTCTGCATCTAATTGCTGAAGCACAGAAGCAAGGAGCATATTGTGTCTTTGTTGACGCTGAGCATGCGCTTGATTCATCATTGGCTGAGGCAAT TGGTGTGAATACTGAGAATTTGCTAATTTCACAACCTGACTGTGGTGAACAAGCTCTTAGCCTTGTAGATACCATAATCCGAAGTGGTTCTGTTGGAGTG GTTGTTGTTGACAGTGTTGCAGCTCTTGTTCCAAAAAGCGAACTTGACGGGGAGATGGGTGATGCTCATATGGCAGTGCAGGCTAGGTTGATGAGCCAGG CACTTCGGAAGTTAAGCCACTCTTTATCAATGTCTCAAACAATCCTGATATTTATAAATCAGGTGAGATCAAAGATTTCTACCTTCGGTGGGTTTGGTGG ACCTCAAGAAGTAACTTGTGGAGGCAATGCTCTGAAGTTCTATGCTTCAGTCCGCCTGAACATAAAAAGGATAGGGCTTGTCAAGAAGGGAGAAGAGACT GTTGGAAGTAGGGTTCAAGTAAAAGTGGTGAAGAATAAGCTTGCTCCTCCATTCAAAACCATTGAATTTGAGCTGGAGTTTGGGAAAGGAATATGCCAAG CATCAGAGATAATAGAGCTCGGGTTAAAACACAAGATAATGACAAAGGCAGGGTCTTTTTACAGTTACGAGGAAAAGCGGTTCCATGGTAAGGATGCGCT GAAGGCATTCATAAATGGGAATGAAGATGCACGTGAAGAAATGAAAATGAAGATCAAAGAGAAGCTAGCAGCAGCAGCAGCAGATGCTGTGTATAATGAC AAGGAAAGTGCGGAGTCCACAGCGACAGACAGTAGCGAAATCATAGCGTCAGATTCAACCGACGAAGAGCCTACTGCTATTGAAGCTTAG
AA sequence Show only first row Show all	>Lus10017151 pacid=23167443 polypeptide=Lus10017151 locus=Lus10017151.g ID=Lus10017151.BGIv1.0 annot-version=v1.0 MARQLLRNTLSLKSFLVPEGLCGGVFGTSRVCNFATKVGLFCSIEGRRKSKSDGSDSSEDDLSKREVVLQQAIDHINSTFGKGSIMWFGRAIAPRNTPVV STGSLLLDVALGTGGYPKGRVVEIYGPEASGKTTLALHLIAEAQKQGAYCVFVDAEHALDSSLAEAIGVNTENLLISQPDCGEQALSLVDTIIRSGSVGV VVVDSVAALVPKSELDGEMGDAHMAVQARLMSQALRKLSHSLSMSQTILIFINQVRSKISTFGGFGGPQEVTCGGNALKFYASVRLNIKRIGLVKKGEET VGSRVQVKVVKNKLAPPFKTIEFELEFGKGICQASEIIELGLKHKIMTKAGSFYSYEEKRFHGKDALKAFINGNEDAREEMKMKIKEKLAAAAADAVYND KESAESTATDSSEIIASDSTDEEPTAIEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19490			recA DNA recombination family ...		Lus10017151 [exp]	0	1
AT1G36280			L-Aspartase-like family protei...		Lus10040229 [exp]	1.0	0.8804
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10015414 [exp]	1.4	0.8560
AT1G80880			Tetratricopeptide repeat (TPR)...		Lus10041669 [exp]	4.2	0.8061
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10040404 [exp]	8.8	0.8302
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	10.4	0.8233
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	12.5	0.8006
AT2G25870			haloacid dehalogenase-like hyd...		Lus10006031 [exp]	17.3	0.8169
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	19.4	0.7826
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	20.0	0.7939
AT1G15870			Mitochondrial glycoprotein fam...		Lus10026060 [exp]	21.5	0.7901

Compare expression of checked genes

Lus10017151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.