Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56960 157 / 5e-42 bHLH bHLH041 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G29930 56 / 1e-08 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G16910 54 / 3e-07 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00870 53 / 3e-07 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36930 53 / 3e-07 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G09530 53 / 4e-07 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT1G63650 53 / 5e-07 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G46760 52 / 9e-07 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G00050 51 / 1e-06 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 51 / 1e-06 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042572 [exp] 55 / 2e-08 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 56 / 3e-08 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005999 [exp] 56 / 6e-08 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10012457 [exp] 54 / 1e-07 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 52 / 3e-07 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011899 [exp] 54 / 4e-07 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10022833 [exp] 54 / 4e-07 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10024811 [exp] 52 / 6e-07 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 52 / 7e-07 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148800 [exp] 171 / 4e-46 AT5G56960 204 / 4e-59 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G054100 [exp] 62 / 5e-10 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 61 / 2e-09 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 59 / 6e-09 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G103700 [exp] 56 / 5e-08 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 55 / 9e-08 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G025800 [exp] 54 / 1e-07 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G124400 [exp] 54 / 1e-07 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G111400 [exp] 54 / 2e-07 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.003G128000 [exp] 54 / 2e-07 AT5G41315 561 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10017152 pacid=23167417 polypeptide=Lus10017152 locus=Lus10017152.g ID=Lus10017152.BGIv1.0 annot-version=v1.0 ATGGAGAGCATATTTTCGCAGGAAAGGGAAGTGGAGCTTCCGGCTTATCTGGAAGCGCTGATGCACTACTTCGGCAGCTCTTATATTTGCCTTTGGTCCT ATCACCCTCACCCTTCCAAAATATGCATGAATACTGAATGCAGCAGCTCTTTAGTGTTCTTGGCCGGATTCTACCAACAGCAGCGTAATGATCATTTGTT GTTACCAACTACTTCTTCTTCTTCTGCTGCAATATCAGAGGTAGCAGCCAGACGCCATTTCAATGACTACATACAATCAGCGTTCCCTCCTCTCAATGAT CGAGTTCCGGGGCAGGCGTTGAAGAATAACCAGCCTTACGTAGAGTTGAATGAAGGTCAGCTTATGCGAATGGCATCCATCCTTCCCCAACGCCTCTTTT ACAAGAGAGCAGTGTTTATGGGGTGCAGAAGCGGCGAGATTGAACTTGGTTGGTCGAATCTGACGGCTCAACAAATGAGGATAGAGAGTGAGATGATGAA GTTGTTCCCAGAGGACTTTTCCCGTAGGAGGAGGCCTCTGATAACAGCAGATGCTGCTATGGCTGCAAACCAAGCTGGGCAATCTTCTTCTTCGTCTTCT TTAAGATCAGCATCCCCACTAGATAACACTACTACTACTACTACTAGTCCTACTCCTTCGGAACTCTCTTCATTTCTCATCAACAATATCACCTCCCCGG CCCCGGCAACTATTACCCACCAATCGAGCGAGGTGGTGGTGGACGCTGCTATCACCAGAGCTTTGCTAGCTGTCTTCACATCATCTACTCTTCCTCACCC ATCTACTAATACTACTATTACTCCGCCGCCTAACACTAGTACTAGTACTAGTACTAGTAGTGCTTTCAACAAGTTTTCTACTACTGGATCATTATCGGCC TCCAGACTTCCCGGGGGGGTTGGTGTGCAAAATCGTCCGAGCATGTTCAAGAGGGCACTTGCTTACTACAGGACAAGGCGGCGGCAGCAACAGCAGGAGG AGAAGCAACAACTACAACATATGACGACGACTAATGTGGGGCCCAGCAGCACTCAGCTTCACCACATGATCTCGGAGCGCCGCCGCCGTGAGAAGATCAA TCACAGCTTCCAAGCCCTCCGCTCCCTCCTTCCTCCCCACCCAAAGAAAGACAAAGCAACGGTGCTGAGCCGGACGAGGGAGTACTTGAAGTCATTGATT ACCCAAGTGGCTCAACTCTCACAAAGGACCCGACAACTTGAATCGAAACTAGTACAACTTAACCAGCCAGCTGCGGCTGTTGGTGCGGCCGTCAACATCA AAGAACCCGAAACAAAAGCGGTGGACATCATTCCGACAGCATATCAAAGAGTGGACGTACGATTGAGAGCAGTGGAGGAAACGACGTCATCGGAGCAGCA TAATATTGTGGAGCTTCAAGTCACCTTATTACGAGATGATCATCGTTCGGTTTCAGATATAGTGATTCGGGTGCTTGAGTTTCTAAGACAGCTCCGTCAC GTTAATTTGATTGCAATTGAAGCAAACACTACTACTTCTACAAGCCACGTGGCGCCATTGTCGTCTGAACAAACCCTACTGCATTTCAGCCGAGCGACTT TCACTCTACAGATTGAGGGAGATGAATGGGACGAAGCAGCCTTCCTAGAAGCAGTGAGGAGAGTAGTTGCTGACCTGGCGCAATGA
AA sequence Show only first row Show all	>Lus10017152 pacid=23167417 polypeptide=Lus10017152 locus=Lus10017152.g ID=Lus10017152.BGIv1.0 annot-version=v1.0 MESIFSQEREVELPAYLEALMHYFGSSYICLWSYHPHPSKICMNTECSSSLVFLAGFYQQQRNDHLLLPTTSSSSAAISEVAARRHFNDYIQSAFPPLND RVPGQALKNNQPYVELNEGQLMRMASILPQRLFYKRAVFMGCRSGEIELGWSNLTAQQMRIESEMMKLFPEDFSRRRRPLITADAAMAANQAGQSSSSSS LRSASPLDNTTTTTTSPTPSELSSFLINNITSPAPATITHQSSEVVVDAAITRALLAVFTSSTLPHPSTNTTITPPPNTSTSTSTSSAFNKFSTTGSLSA SRLPGGVGVQNRPSMFKRALAYYRTRRRQQQQEEKQQLQHMTTTNVGPSSTQLHHMISERRRREKINHSFQALRSLLPPHPKKDKATVLSRTREYLKSLI TQVAQLSQRTRQLESKLVQLNQPAAAVGAAVNIKEPETKAVDIIPTAYQRVDVRLRAVEETTSSEQHNIVELQVTLLRDDHRSVSDIVIRVLEFLRQLRH VNLIAIEANTTTSTSHVAPLSSEQTLLHFSRATFTLQIEGDEWDEAAFLEAVRRVVADLAQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Lus10017152 [exp]	0	1
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	1.4	0.9878
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	5.3	0.9841
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	8.0	0.9765
AT1G49860		ATGSTF14	glutathione S-transferase (cla...		Lus10036808 [exp]	8.8	0.9697
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	10.7	0.9746
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	13.0	0.9767
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	15.4	0.9697
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	15.9	0.9740
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10014191 [exp]	17.4	0.9682
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10000193 [exp]	18.7	0.9702

Compare expression of checked genes

Lus10017152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.