Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13920 757 / 0 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 750 / 0 EIF4A-2 eif4a-2 (.1.2) AT1G72730 726 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 480 / 3e-169 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 435 / 8e-152 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 255 / 4e-80 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT4G00660 253 / 6e-79 ATRH8 RNAhelicase-like 8 (.1.2) AT2G45810 249 / 1e-77 DEA(D/H)-box RNA helicase family protein (.1) AT5G11170 218 / 1e-66 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 218 / 1e-66 DEAD/DEAH box RNA helicase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037620 [exp] 759 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 758 / 0 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10021583 [exp] 603 / 0 AT3G13920 540 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017407 [exp] 483 / 2e-170 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 473 / 4e-166 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10040975 [exp] 337 / 3e-114 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10014783 [exp] 254 / 1e-79 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017804 [exp] 254 / 2e-79 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 246 / 2e-76 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G043700 [exp] 782 / 0 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 776 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 775 / 0 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 770 / 0 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.005G093900 [exp] 475 / 3e-167 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 474 / 6e-167 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.002G157500 [exp] 257 / 8e-81 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 254 / 1e-79 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.018G028600 [exp] 218 / 2e-66 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.006G253100 [exp] 216 / 9e-66 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10017153 pacid=23167404 polypeptide=Lus10017153 locus=Lus10017153.g ID=Lus10017153.BGIv1.0 annot-version=v1.0 ATGGCAGGACTAGCACCCGAGGGATCCCAGTTTGATGCTAAGCAGTACGATGCCAAGATGAGTGAACTGATTTCAGCTGATGGTCAGGACTACTTCGCTT CCTATGACGAGGTTCATGAAACCTTCGACTCTATGGGTTTGCAGGAGAATCTTCTCAGAGGAATTTATGCATATGGTTTTGAGAAGCCGTCTGCAATCCA GCAGAGGGGGATTGTTCCCTTTTGCAAGGGACTAGATGTTATTCAACAGGCTCAATCTGGAACTGGAAAGACTGCTACTTTCTGTTCTGGTATCCTGCAA CAACTTAATTATGGTCTAGTTGAATGCCAAGCACTGGTCTTGGCACCCACTAGGGAGCTGGCTCAGCAGATTGAAAAGGTTATGCGAGCCCTTGGTGATT ATCTTGGAGTCAAGGTGCATGCATGTGTTGGTGGAACTAGTGTTCGTGAAGACCAACGTATCCTCTCAAGTGGAGTCCATGTTGTTGTTGGTACTCCTGG TCGTGTGTTCGATATGCTCCGCAGACAGTCCCTTCGAGCTGATTCGATCAAGATGTTTGTGTTGGATGAAGCTGATGAGATGCTCTCTCGTGGATTTAAG GATCAAATCTACGACATCTTCCAGCTTTTGCCACCAAACATCCAAGTTGGCGTTTTCTCTGCAACAATGCCACCTGAGGCTCTTGATATTACAAGGAAAT TCATGAACAAACCAGTTAGGATTCTGGTGAAGCGTGAGGAGCTAACCTTGGAGGGTATCAAACAGTTCCATGTGAATGTGGACAAAGAAGAATGGAAGTT GGAGACACTGTGTGATCTTTATGAGACCTTAGCCATTACTCAGAGTGTTATCTTTGTGAACACCAGGCGCAAGGTGGACTGGCTGACTGACAAGATGAGG AGCAGAGACCACACAGTGTCAGCTACTCATGGTGACATGGACCAGAACACTAGGGACATCATCATGAGGGAGTTCAGGTCTGGCTCATCCCGTGTCCTGA TCACTACCGACCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCGCTTGTGATCAACTATGATCTGCCAACCCAACCGGAGAACTACCTGCATAGGAT TGGACGTGGTGGACGTTTTGGGAGGAAAGGTGTGGCTATCAACTTTGTGACCACCGATGATGAGAGGATGCTTTTCGACATCCAGAAGTTCTACAATGTG GTGATTGAGGAGCTCCCAGCCAATGTTGCTGATCTTCTGTGA
AA sequence Show only first row Show all	>Lus10017153 pacid=23167404 polypeptide=Lus10017153 locus=Lus10017153.g ID=Lus10017153.BGIv1.0 annot-version=v1.0 MAGLAPEGSQFDAKQYDAKMSELISADGQDYFASYDEVHETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ QLNYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRADSIKMFVLDEADEMLSRGFK DQIYDIFQLLPPNIQVGVFSATMPPEALDITRKFMNKPVRILVKREELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRGGRFGRKGVAINFVTTDDERMLFDIQKFYNV VIEELPANVADLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10017153 [exp]	0	1
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	1.0	0.9637
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	1.4	0.9593
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	4.7	0.9364
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10015806 [exp]	5.7	0.9394
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	6.3	0.9378
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	8.1	0.9517
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10005804 [exp]	8.1	0.9325
AT2G04390			Ribosomal S17 family protein (...		Lus10029412 [exp]	8.7	0.9379
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010370 [exp]	8.9	0.9451
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	8.9	0.9511

Compare expression of checked genes

Lus10017153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.