Plant FIBer expression Database

Lus10017154 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19450 665 / 0 RDS1, DGAT1, ATDGAT, AS11, ABX45, TAG1 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021582
[exp]
988 / 0 AT2G19450 692 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G066100
[exp]
727 / 0 AT2G19450 690 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Potri.006G147600
[exp]
718 / 0 AT2G19450 690 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0517 MBOAT-like PF03062 MBOAT MBOAT, membrane-bound O-acyltransferase family
Representative CDS sequence
>Lus10017154 pacid=23167392 polypeptide=Lus10017154 locus=Lus10017154.g ID=Lus10017154.BGIv1.0 annot-version=v1.0
ATGGCGGTGCTCGACACCCCTGACAATCACATAAACCCCTCTCCCTCCACCTCTGCTATTGACTCCTCCGATCTTAACGGTCTCTCCCTTCGACGTCGTT
CAGTTGCCACTAACTCCGACCAAGGTACTTCTTCCACCGCTGTAGAATCACTCCACGCGGATCGGCCAGCCGATTCTGATGGGGCGAACCGCGAGGATAA
GAAGATTGACAATCGGGACGGTCAAGTTGCGAGATCGGATATCAAATTCACTTACCGCCCTTCCGTGCCCGCTCACGTCAAGGTTAAAGAGAGTCCGCTT
AGTTCCGGCGCCATTTTTAAGCAGAGCCATGCAGGCCTCTTCAATCTCTGTATTGTAGTCCTAGTTGCAGTCAACAGCAGGCTTATTATCGAGAATATCA
TGAAGTATGGTTGGTTAATTAGGACAGGCTTCTGGTTCAGTTCAAAATCGTTGAGAGATTGGCCTCTTTTCATGTGCTGTCTAACACTTCCAGTGTTCGC
GCTTGCTGCATATCTAGTTGAGAAATTGGCGTACCGGAAATATCTCTCTGAACCTATAGTCGTTTCCCTCCACATAATCATCTCCGTGGTAGCAGTTGTG
TACCCTGTTTCAGTGATTCTCAGCTGCGACTCTGCATTTGTATCTGGTGTGACGTTGATGCTTTTTGCTTGTATTGTGTGGTTAAAATTGGTCTCATATG
CTCATACGAACTATGATATGAGAGCGGTTGCCAAGTCAGTTGAAAAGGGAGAAGCACCTTCTGCTGCTTTGAATGTTGATTACTCTTATGACGTTAACTT
CAAGAGCTTGGTGTATTTTATGATTGCTCCAACACTGTGCTATCAGCCAAGCTATCCACGCACTCCATGTATCCGAAAGGGTTGGCTGGTTCATCAGTTC
ATCAAGTTAGTAATATTTACAGGCTTGATGGGATTCATTATAGAGCAATATATCAATCCAATTATCCAGAACTCTCAGCATCCTTTTAAAGGGAATCTAT
TATATGGAATTGAGAGGGTTTTGAAACTTTCGGTCCCAAACTTGTATGTGTGGCTGTGCATGTTCTACTGCTTCTTTCATCTATGGTTAAATATACTTGC
AGAGCTCCTACGATTTGGTGATAGAGAATTCTACAAAGATTGGTGGAATGCAAAAACTGTTGAAGAATACTGGAGAATGTGGAACATGCCAGTTCATAAA
TGGATGGTTCGCCATATCTATTTCCCATGTCTGCGGCACAACATTCCTAAGGGAGTAGCAATACTTATAGCCTTCTTTGTTTCTGCAGCATTTCATGAGT
TGTGTATCGCAGTTCCTTGCCACATATTCAAGCTCTGGGCTTTTCTTGGGATTATGTTCCAGATTCCACTGGTGTGGATAACAAACGTTCTACAGCAGAA
GTTCAAGAGCTCGATGGTGGGGAACATGATATTCTGGTCAATGTTCTGCATATTTGGTCAACCAATGTGTGTGCTTCTCTACTATCATGACTTGATGAAC
AGGAATGGGAAAGATGGAATCTGA
AA sequence
>Lus10017154 pacid=23167392 polypeptide=Lus10017154 locus=Lus10017154.g ID=Lus10017154.BGIv1.0 annot-version=v1.0
MAVLDTPDNHINPSPSTSAIDSSDLNGLSLRRRSVATNSDQGTSSTAVESLHADRPADSDGANREDKKIDNRDGQVARSDIKFTYRPSVPAHVKVKESPL
SSGAIFKQSHAGLFNLCIVVLVAVNSRLIIENIMKYGWLIRTGFWFSSKSLRDWPLFMCCLTLPVFALAAYLVEKLAYRKYLSEPIVVSLHIIISVVAVV
YPVSVILSCDSAFVSGVTLMLFACIVWLKLVSYAHTNYDMRAVAKSVEKGEAPSAALNVDYSYDVNFKSLVYFMIAPTLCYQPSYPRTPCIRKGWLVHQF
IKLVIFTGLMGFIIEQYINPIIQNSQHPFKGNLLYGIERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLRFGDREFYKDWWNAKTVEEYWRMWNMPVHK
WMVRHIYFPCLRHNIPKGVAILIAFFVSAAFHELCIAVPCHIFKLWAFLGIMFQIPLVWITNVLQQKFKSSMVGNMIFWSMFCIFGQPMCVLLYYHDLMN
RNGKDGI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G19450 RDS1, DGAT1, AT... TRIACYLGLYCEROL BIOSYNTHESIS D... Lus10017154
[exp]
0 1
AT4G31080 Protein of unknown function (D... Lus10009546
[exp]
3.2 0.8258
AT5G24810 ABC1 family protein (.1.2) Lus10020168
[exp]
3.5 0.8186
AT1G77610 EamA-like transporter family p... Lus10029663
[exp]
4.0 0.8470
AT5G52560 ATUSP UDP-sugar pyrophosphorylase (.... Lus10000971
[exp]
4.6 0.7945
AT1G17120 CAT8 cationic amino acid transporte... Lus10005574
[exp]
6.6 0.7667
AT2G25790 Leucine-rich receptor-like pro... Lus10006045
[exp]
8.5 0.7887
AT5G15050 Core-2/I-branching beta-1,6-N-... Lus10030084
[exp]
10.4 0.7417
AT2G01820 CYCJ18 Leucine-rich repeat protein ki... Lus10035104
[exp]
11.8 0.8029
AT4G30020 PA-domain containing subtilase... Lus10006973
[exp]
12.3 0.8057
AT5G62620 Galactosyltransferase family p... Lus10036686
[exp]
13.3 0.7575

Lus10017154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.