Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57030 778 / 0 LUT2 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) AT5G57020 436 / 1e-141 ATNMT1, NMT1 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1) AT3G10230 279 / 1e-82 AtLCY, LYC lycopene cyclase (.1.2) AT2G44175 81 / 6e-18 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021576 [exp] 1053 / 0 AT5G57030 805 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10021577 [exp] 527 / 2e-176 AT5G57020 752 / 0.0 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1) Lus10000221 [exp] 283 / 3e-88 AT5G57030 251 / 9e-82 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10027278 [exp] 280 / 1e-82 AT3G10230 832 / 0.0 lycopene cyclase (.1.2) Lus10038986 [exp] 280 / 2e-82 AT3G10230 831 / 0.0 lycopene cyclase (.1.2) Lus10013298 [exp] 224 / 3e-63 AT3G10230 508 / 3e-177 lycopene cyclase (.1.2) Lus10005189 [exp] 71 / 2e-14 AT3G10230 131 / 2e-38 lycopene cyclase (.1.2) Lus10005190 [exp] 62 / 8e-11 AT3G10230 159 / 3e-48 lycopene cyclase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G147300 [exp] 764 / 0 AT5G57030 723 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Potri.006G147500 [exp] 458 / 7e-150 AT5G57020 780 / 0.0 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1) Potri.018G066200 [exp] 457 / 2e-149 AT5G57020 784 / 0.0 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1) Potri.006G043092 [exp] 278 / 4e-82 AT3G10230 794 / 0.0 lycopene cyclase (.1.2) Potri.016G040200 [exp] 276 / 2e-81 AT3G10230 770 / 0.0 lycopene cyclase (.1.2) Potri.009G159800 [exp] 246 / 1e-70 AT3G10230 538 / 0.0 lycopene cyclase (.1.2) Potri.004G197100 [exp] 242 / 2e-69 AT3G10230 533 / 0.0 lycopene cyclase (.1.2) Potri.001G229166 [exp] 83 / 2e-18 AT3G10230 137 / 7e-40 lycopene cyclase (.1.2) Potri.001G219250 [exp] 41 / 0.0004 AT3G10230 62 / 8e-13 lycopene cyclase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF01233 [flax] [poplar] NMT Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF05834 [flax] [poplar] Lycopene_cycl Lycopene cyclase protein
Representative CDS sequence Show only first row Show all	>Lus10017156 pacid=23167462 polypeptide=Lus10017156 locus=Lus10017156.g ID=Lus10017156.BGIv1.0 annot-version=v1.0 ATGGGTGATAACAACGATCATTCCTCTCCTGGGGAAAACCCAGATCATGAGTCTGTGGCTCATCCTGTTGAATCTCAGGAAGACAGCTCTATGGAAACCA TTGTTCGCAAGATTCAGGATTCCATGTCCTTAGGCAAGCAACACAAGTTTTGGGAAACCCAACCAGTCGGTCAATTCAAGGATGTTGGGGATACGAGTTT GCCTGAAGGACCTATTGAGCCTCCAACCCCATTGTCTGAGGTGAAACAAGAGCCTTACAATCTACCTGCTCAATACGAATGGACTACTTGTGACATGGAA TCTGAGGAGACCTGTAATGAGGTCTATGCATTGTTGAAGAACAACTATGTCGAGGACGATGAGAACATGTTTAGGTTCAATTACTCCAAGGAGTTCCTCA GCTGGGCATTGCGTCCCCCTAGCTATTACAAGAGCTGGCACATTGGTGTGCGTGCTAAGGCTTCCAAGAAACTTGTTGCTTTCATAACCGGTATCCCAGC AAGGATCAGGGTTCGTGATGAAATTGTGAAAATGGCTGAGGTCAACTTTCTGTGTGTTCATAAAAAACTTAGGACCAAGAGACTTGCACCAGTAATGATC AAAGAGGTTACTAGGAGGGTTCATTTGGAGAATATTTGGCAAGCAGCATATACAGCTGGTGTGGTTTTACCAACTCCAGTAACCACTGCTCAATATTGGC ACAGGTCCTTGAACCCCAAGAAGCTTATTGATGTTGGCTTCTCCAGGCTTGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNAGCGCGGAACATGGCGATCATGGCTGTATACTCCTGCCCTACGACGAGTTCTCGGCGGAGAGTGCAGCTCACTCATCGTCCTCCTTCCTTCG CTGGAGATAAGAAAAACCGTTTATGTACTGAGCTGAAAGCGAATGCCGGATCCGGGAGCGAGAGTTGCCTTGCTGTTAGAGAGGATTTTGGAGATGATGA GGATTTCGTCAAAGCTGGTGGTTCCGAGCTGTATTTTGTACAAATGCAGCAGAGAAAAGAGATGGAGAAACAGTCCAAGCTTGCTGATAAGTTACCCCCT ATACCAATCCTAGGCGAAGTACTGGATTTGGTAGTGATTGGTTGTGGTCCAGCTGGACTGGCACTTGCGGCAGAATCAGCTAAGTTGGGTTTGAATGTCG GTCTTATTGGACCTGATCTTCCTTTTACTAACAACTACGGAGTTTGGGAGGATGAATTCAAAGATCTCGGTCTCGCTGGATGCATTGAGCACGTCTGGAG GGATACTATTGTATATCTTGACGAGGACGACCCCGTTATGGTTGGTCGTGCTTATGGACGAGTTAATAGAGACTTACTTCATGAAGAATTGTTGAGAAGG TGTGTCGAGTCAGGTGTTTCATATCTTAACTCCAAAGTGGAAAGTATTGATGAAGCAAGTAATGGGCACAGTACTGTAGTATGTGAGGATAATATTCTTA TTCAATGCAGACTTGCCTCTGTTGCATCAGGAGCTGCTTCAGGTAAACTCTTGCAGTACGAGGTAGGGGGCCCAAGGGTCTCTGTTCAAACTGCTTATGG TGTGGAGGTTGAGGTGGAAAACAATCCATATGATCCCAGTCTGATGGTTTTCATGGATTACAGAAACTATACTAAACAAAAATCATCATCTTTGGAAGCT CAATACCCAACATTCCTTTATGCCATGCCCATGTCACCAACGAGAGTCTTCTTTGAGGAAACATGTTTGGCATCAAAAGATGCCATGCCGTTTGACTTGC TGAAACGAAAACTTATGTCAAGACTAGACACCATGGGAATCCGAATCTTGAGAACTTACGAAGAGGAGTGGTCATACATTCCAGTAGGTGGTTCCTTACC GAATACCGAGCAAAAGAACCTTGCATATGGTGCCGCTGCTAGCATGGTACATCCAGCAACAGGGTATTCGGTTGTGAGGTCATTGTCAGAGGCTCCTAGT TATGCTTCGGTCATCGCAAATATACTAACACAAGACCAGTATAAAGGCAACAACCTTAGTCAGAGAAGAAGCAACGTAAACATTTCGATGCAGGCTTGGG ATTCTCTATGGCCTCTGGAAAGGAAACGTCAACGGGCATTCTTTCTGTTTGGGTTAGCGTTGATAGTGCAGCTGGATATTGAGGGCATTAGGACATTTTT CCGTACTTTCTTCCGAGTGCCTAGATGGATGTGGCAAGGATTTCTGGGCTCCAATCTGTCATCGGTGGATCTCATACTATTCTCCTTTTACATGTTTGTT ATTGCACCAAATGAAATGAGAATGAATCTTGTTAGGCATCTACTATCTGATCCGACTGGAGCAACTATGATCAAAACTTATCTCACTATATAG
AA sequence Show only first row Show all	>Lus10017156 pacid=23167462 polypeptide=Lus10017156 locus=Lus10017156.g ID=Lus10017156.BGIv1.0 annot-version=v1.0 MGDNNDHSSPGENPDHESVAHPVESQEDSSMETIVRKIQDSMSLGKQHKFWETQPVGQFKDVGDTSLPEGPIEPPTPLSEVKQEPYNLPAQYEWTTCDME SEETCNEVYALLKNNYVEDDENMFRFNYSKEFLSWALRPPSYYKSWHIGVRAKASKKLVAFITGIPARIRVRDEIVKMAEVNFLCVHKKLRTKRLAPVMI KEVTRRVHLENIWQAAYTAGVVLPTPVTTAQYWHRSLNPKKLIDVGFSRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXARNMAIMAVYSCPTTSSRRRVQLTHRPPSFAGDKKNRLCTELKANAGSGSESCLAVREDFGDDEDFVKAGGSELYFVQMQQRKEMEKQSKLADKLPP IPILGEVLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLAGCIEHVWRDTIVYLDEDDPVMVGRAYGRVNRDLLHEELLRR CVESGVSYLNSKVESIDEASNGHSTVVCEDNILIQCRLASVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRNYTKQKSSSLEA QYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKRKLMSRLDTMGIRILRTYEEEWSYIPVGGSLPNTEQKNLAYGAAASMVHPATGYSVVRSLSEAPS YASVIANILTQDQYKGNNLSQRRSNVNISMQAWDSLWPLERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFRVPRWMWQGFLGSNLSSVDLILFSFYMFV IAPNEMRMNLVRHLLSDPTGATMIKTYLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	0	1
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10030559 [exp]	1.4	0.9236
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031216 [exp]	7.4	0.8943
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10008901 [exp]	8.6	0.9149
AT4G36390			Methylthiotransferase (.1)		Lus10028344 [exp]	10.6	0.8896
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10012268 [exp]	11.6	0.8999
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Lus10019959 [exp]	12.0	0.8962
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10036651 [exp]	12.0	0.9035
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10022787 [exp]	12.6	0.8727
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	12.7	0.8755
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	15.0	0.8959

Compare expression of checked genes

Lus10017156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.