Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66240 541 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT5G14530 324 / 1e-108 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 91 / 3e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 71 / 1e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 72 / 3e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 68 / 3e-12 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 68 / 6e-12 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G08390 65 / 7e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 62 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G18140 58 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021575 [exp] 680 / 0 AT5G66240 540 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10014558 [exp] 342 / 1e-115 AT5G14530 552 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032128 [exp] 159 / 4e-46 AT5G14530 260 / 8e-87 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 88 / 6e-19 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 84 / 1e-17 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 73 / 5e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 72 / 1e-13 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 72 / 2e-13 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 70 / 5e-13 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114600 [exp] 622 / 0 AT5G66240 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.001G345900 [exp] 334 / 2e-112 AT5G14530 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.017G071900 [exp] 330 / 9e-111 AT5G14530 558 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 91 / 4e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 85 / 4e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 68 / 2e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 67 / 5e-12 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 66 / 4e-11 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 64 / 1e-10 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 62 / 4e-10 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10017157 pacid=23167393 polypeptide=Lus10017157 locus=Lus10017157.g ID=Lus10017157.BGIv1.0 annot-version=v1.0 ATGGAAGGGACGCAATCAGGAAGAGGAGATGAGAAAGTGTCACTAGAGCTCACAGAAGAGATTCTTCAGAGCATGGAAACCGGCATGGTTTTCAGAGACT ACAGTGGTAGAATCAGTTCAATGGACTTCCACAAGCCGTCCAGCTACTTGGTGACTGCTAGCGACGATGAATCTATTCGTCTTTATGATGTTGCCACTGC AACATGTTTGAAGACGATTAATAGCAAAAAGTACGGTGTTGATCTGGTTTCCTTCACTTCTCATCCTACAACTGTCATATATTCTTCAAAAAATGGATGG GACGAATCTCTTCGGCTCCTCTCCTTGAATGATAACAAGTATTTGCGTTATTTTAAGGGTCACCATGACAGGGTTGTTTCACTAAGTTTTTGTGCTCGCA AAGACTGTTTCATTTCTGGTTCTTTAGATCGAACTGTCTTGCTCTGGGATCAGCGAGCTGAAAAGTGTCAGGGTCTTTTGCGCGTCCAAGGAAGGCCTGC ATCAGCATATGATGACCAGGGACTAGTTTTTGCTGTGGCTTTCGGAGGGTACATAAGAATGTTTGATTCTCGTAAATATGAAAAGGGTCCTTTCGAGATT TATTCTGTGGGGGGAGATATCTCGGATGCAAATGCTGTAAAGTTTAGCAATGATGGCAGACTCATGCTTCTGACAACTATGGATGGACATATTCATGTAG TTGATTCATTCCGTGGAACATTGCTATGCACCTACAACGTGAAACCAGTTTCAAGCAATTCAACATTGGAAGCATCTTTCAGCCCTGATGGAATGTATGT TATATCAGGCTCAGGGGATGGTAGCGTCCATGCTTGGAGCATAAGGACCGGGAAGGAGGTAGCTAGTTGGATGACTTATGAAACAGAACCTCACGTCATA AAATGGGCTCCTGGAACTCTAATGTTTGCAACTGGGTCTTCAGAACTGTCGTTTTGGGTTCCAGATTTGTCCAAGTTGGCAGCTTATGTTGGAAGAAACT CAAATCAGTGGCCAGCAAGTAGCTGTTTGTATGTTGATACCCATACTGTGCCAAATTGGGTTTTGCCGTCTGCTGCATTCGTGTTTGCTACTTGGAGATT GTCGCGAGACTGCTTGCTTGGGTTCAAGATTGGTATTGAAACTGCCTGGGATTCAGGTCTTGCACAACTCAAAGCTATACCCTATGATAAATCGCAATCT AAAACGAATTGCAATTGCGAAGTTCCACATTGGGCACTTGATGATACAAAAGAGCTAGCACAAATTGCTATCAACTGTGTTAATCTTCGGTTCCTAATTG ACACCATATATAGCAACGATCTTTCCGACTAA
AA sequence Show only first row Show all	>Lus10017157 pacid=23167393 polypeptide=Lus10017157 locus=Lus10017157.g ID=Lus10017157.BGIv1.0 annot-version=v1.0 MEGTQSGRGDEKVSLELTEEILQSMETGMVFRDYSGRISSMDFHKPSSYLVTASDDESIRLYDVATATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGW DESLRLLSLNDNKYLRYFKGHHDRVVSLSFCARKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPASAYDDQGLVFAVAFGGYIRMFDSRKYEKGPFEI YSVGGDISDANAVKFSNDGRLMLLTTMDGHIHVVDSFRGTLLCTYNVKPVSSNSTLEASFSPDGMYVISGSGDGSVHAWSIRTGKEVASWMTYETEPHVI KWAPGTLMFATGSSELSFWVPDLSKLAAYVGRNSNQWPASSCLYVDTHTVPNWVLPSAAFVFATWRLSRDCLLGFKIGIETAWDSGLAQLKAIPYDKSQS KTNCNCEVPHWALDDTKELAQIAINCVNLRFLIDTIYSNDLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	0	1
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	2.2	0.8546
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	6.7	0.8190
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	7.0	0.8203
					Lus10034887 [exp]	7.1	0.7974
AT5G03500			Mediator complex, subunit Med7...		Lus10029326 [exp]	8.4	0.8103
					Lus10029394 [exp]	8.9	0.8496
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	10.6	0.8194
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	11.0	0.8228
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	11.1	0.7875
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	13.9	0.8298

Compare expression of checked genes

Lus10017157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.