Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57040 253 / 2e-86 Lactoylglutathione lyase / glyoxalase I family protein (.1) AT1G80160 60 / 2e-11 GLYI7 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT1G15380 59 / 5e-11 GLYI4 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT2G28420 53 / 9e-09 GLYI8 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021573 [exp] 174 / 8e-56 AT5G57040 163 / 2e-51 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10021574 [exp] 143 / 1e-44 AT5G57040 132 / 6e-41 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10030070 [exp] 55 / 2e-09 AT1G80160 247 / 7e-85 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10014480 [exp] 53 / 8e-09 AT1G80160 244 / 1e-83 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10025971 [exp] 47 / 1e-06 AT1G15380 165 / 3e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10039579 [exp] 46 / 5e-06 AT2G28420 248 / 2e-84 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10014269 [exp] 45 / 8e-06 AT1G15380 166 / 2e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10005324 [exp] 44 / 2e-05 AT2G28420 245 / 2e-83 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G056200 [exp] 227 / 5e-76 AT5G57040 253 / 2e-86 Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.007G129200 [exp] 56 / 5e-10 AT1G80160 225 / 1e-76 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G062400 [exp] 56 / 5e-10 AT1G80160 261 / 2e-90 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.001G171600 [exp] 54 / 4e-09 AT1G80160 270 / 6e-94 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G015100 [exp] 49 / 2e-07 AT1G15380 167 / 7e-53 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.009G055500 [exp] 49 / 2e-07 AT2G28420 229 / 1e-77 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.005G117000 [exp] 48 / 7e-07 AT1G80160 166 / 2e-52 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.010G087000 [exp] 44 / 8e-06 AT2G32090 189 / 3e-63 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G009000 [exp] 41 / 0.0001 AT1G80160 190 / 8e-62 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10017158 pacid=23167399 polypeptide=Lus10017158 locus=Lus10017158.g ID=Lus10017158.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCCCGCTCGCCCCATCATCCACCGCAGTGGCCGTTCAGCTTGGTTCACAATCCTCTACTTCCTCCCTTCTTCCTCCATCTCAAATTCCAA GGTTTCTCCGCAGCCATGGCAGATTCAGAAGAATAAGAGCTGAATCAAATGTCGCCGCTCGAGATTCAATGACCGCCGCTGTTAATAATCCCATCATCGG CAGAGCAGATTATGGAGTGGTCGGAGTTCACCATGTTGGAATCCTGTGCGAGAATCTGGAAAAGTCGCTTGAATTCTATCAGGGAATGTTAGGGCTTGAA ATAAACGAGGAAAGGCCTCACGATAAGCTTCCATATAGAGGTGCTTGGTTGTGGGTGGGTGCTGAGATGATCCATCTAATGGAGCTTCCGAATCCAGATC CCTTAACTGGACGCCCTCAACATGGCGGCCGCGATCGCCATGCCTGCCTAGCCATCCGCAATGTCTCCAACCTCAAAAACCTCCTCGACCAAGCTGGACA TCCGTATACACTTAGCAAGTCCGGGAGGCCTGCAATCTTCACACGGGATCCTGATGCCAATGCGCTCGAGTTTACTCAAGTCGACTGA
AA sequence Show only first row Show all	>Lus10017158 pacid=23167399 polypeptide=Lus10017158 locus=Lus10017158.g ID=Lus10017158.BGIv1.0 annot-version=v1.0 MASLPLAPSSTAVAVQLGSQSSTSSLLPPSQIPRFLRSHGRFRRIRAESNVAARDSMTAAVNNPIIGRADYGVVGVHHVGILCENLEKSLEFYQGMLGLE INEERPHDKLPYRGAWLWVGAEMIHLMELPNPDPLTGRPQHGGRDRHACLAIRNVSNLKNLLDQAGHPYTLSKSGRPAIFTRDPDANALEFTQVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	0	1
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	1.7	0.9418
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	3.0	0.9369
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10018568 [exp]	3.2	0.9353
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10039800 [exp]	4.7	0.9272
AT1G64680			unknown protein		Lus10001667 [exp]	4.9	0.9371
AT1G71480			Nuclear transport factor 2 (NT...		Lus10041048 [exp]	5.5	0.9291
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10018337 [exp]	6.0	0.9297
AT4G38225			unknown protein		Lus10026560 [exp]	6.2	0.9232
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	6.3	0.9308
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	6.5	0.9312

Compare expression of checked genes

Lus10017158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.