Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29830 545 / 0 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 107 / 8e-27 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 107 / 7e-26 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G23430 89 / 3e-19 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 85 / 1e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 86 / 3e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 85 / 4e-18 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G02730 84 / 5e-18 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 85 / 7e-18 TAF5 TBP-associated factor 5 (.1) AT2G22040 82 / 9e-18 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021571 [exp] 639 / 0 AT4G29830 543 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 114 / 4e-28 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 110 / 2e-26 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 92 / 5e-21 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 92 / 6e-21 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 90 / 3e-20 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 88 / 1e-19 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 87 / 3e-19 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 87 / 1e-18 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G145800 [exp] 541 / 0 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 96 / 9e-22 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G051900 [exp] 91 / 1e-20 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 91 / 1e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 89 / 5e-20 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G135600 [exp] 90 / 8e-20 AT2G47990 614 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 89 / 3e-19 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 87 / 1e-18 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G213500 [exp] 86 / 2e-18 AT2G47990 587 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.007G050100 [exp] 84 / 7e-18 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10017159 pacid=23167411 polypeptide=Lus10017159 locus=Lus10017159.g ID=Lus10017159.BGIv1.0 annot-version=v1.0 ATGAAGCTTGCGGGTTTAAAATCCATCGACAGCGCCCACGACGAGTCGGTGTGGGCGGCAACATGGGTCCCCGCCACCACCAGTCGTCCGGCCCTCCTCC TCACTGGATCCCTCGACGAGACCGTCAAGATGTGGAAACCTGACGACCTCAAGCTGGAGAGGACCAATACCGGACACTCCCTCGGCGTTGTCTCTGTCGC CGCCCATCCCTCCGGCATCATAGCTGCATCCGCCTCTCTCGACAGCTTCGTCCGTGTCTTTGATGTTGATACCAACGCCACCATTGCTACTCTCGAAGCT CCTCCCTCCGAAGTCTGGCATATGCAGTTTGATCCCAGGGGTACTAAACTTGCAGTTGCGGGTGGAGGTAGTGCTTCAGTGAAGGTATGGGACACAGCCA CATGGAAGCTGACTTCCACCTTAACGATTCCTCGGCCAGAAGTACCAAAGCCCTCTGATAAAAACACCAGCAAGAAGTTCGTGCTATCGGTTGCTTGGAG CCCTGATGGTAGAAGAATTGCATGTAGCTCAATGGACGGCACCATCTCAGTCTTTGATGTTGCACGGGAGAAGTTTATGCACCACTTAGAAGGGCATTCA ATGGCAGTGAGATCTCTCGTGTATTCCCCAGTTGATCCACGGGTGCTGTTTTCTGCTTCCGATGATGCTCATGTTCATATGTATGATGCTGAAGGGAAAA ATCTGGTGTCAGCAATGTCAGGCCATTCAAGCTGGGTACTGAGTGTGGATGCAAGCCCGGATGGGGCTGCTATAGCCACAGGGTCAAGTGACAGAACTGT AAGGCTATGGGACCTCAGCATGAGGGCTGCTGTCCAGACGATGAGCAACCATACAGACCAAGTTTGGGGTGTAGCATTTCGGCCACCTGGTGGAACCGGA GTGCGAGCTGGCCGGCTGGCTAGTGTATCTGATGACAAAAGCATATCACTGTACGATTACTCTTGA
AA sequence Show only first row Show all	>Lus10017159 pacid=23167411 polypeptide=Lus10017159 locus=Lus10017159.g ID=Lus10017159.BGIv1.0 annot-version=v1.0 MKLAGLKSIDSAHDESVWAATWVPATTSRPALLLTGSLDETVKMWKPDDLKLERTNTGHSLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNATIATLEA PPSEVWHMQFDPRGTKLAVAGGGSASVKVWDTATWKLTSTLTIPRPEVPKPSDKNTSKKFVLSVAWSPDGRRIACSSMDGTISVFDVAREKFMHHLEGHS MAVRSLVYSPVDPRVLFSASDDAHVHMYDAEGKNLVSAMSGHSSWVLSVDASPDGAAIATGSSDRTVRLWDLSMRAAVQTMSNHTDQVWGVAFRPPGGTG VRAGRLASVSDDKSISLYDYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	0	1
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	1.7	0.9686
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	2.0	0.9761
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	2.4	0.9715
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	3.7	0.9507
AT5G52370			unknown protein		Lus10040713 [exp]	4.0	0.9602
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	4.0	0.9683
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	5.5	0.9678
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030595 [exp]	5.9	0.9613
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	6.6	0.9431
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10032045 [exp]	8.2	0.9305

Compare expression of checked genes

Lus10017159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.