Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35460 550 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021569 [exp] 645 / 0 AT5G35460 575 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051100 [exp] 572 / 0 AT5G35460 590 / 0.0 unknown protein Potri.006G145600 [exp] 564 / 0 AT5G35460 536 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10998 [flax] [poplar] DUF2838 Protein of unknown function (DUF2838)
Representative CDS sequence Show only first row Show all	>Lus10017161 pacid=23167469 polypeptide=Lus10017161 locus=Lus10017161.g ID=Lus10017161.BGIv1.0 annot-version=v1.0 ATGTCGAACAGCGACGAAGAACATATTGAAGAATCACTAGTTACAAATGGCGGGGAATCCACCGGCACCATGAAACAGCGGTTGAAGGATCGAACCAAGA GCGTGGTTCATACAAAGGAGATGCTATCGAAACAGGCAATTCAAACCAAGCAGAAGATCGCTAAACAAGCCGTCAAGATCGCCAAACAAGCCGAGGAGCA CGAAAGGTTCATCAATAAGGTGACCCATTTTGTTGGGGTGTTTGGATTCGGAGGATTCTGCTATCTCTTGGGCGCCAGGCCTCAGGATATTCCATACGTG TATTGCTTGTTCTATGTTATATTCGTACCTCTTCGATGGATCTACTACCGTTTCAAGAAATGGCACTATTATCTTCTGGATTTCTGCTACTATGCAAACA CAATCTTCTTGGTCAACCTCCTTCTGTACCCGAAGAACGAGAAGTTCTTCATGGTTTGCTTTTCATTTGCAGAAGGGCCGTTAGCTTGGGCGTTGATAGT TTGGAGATGTAGCTTGGTTTTTAACTCTCTGGACAAACTTGTTAGCGTGCTTATACACCTCTTGCCAGGGCTGGTTTTCTTCACCATTCGGTGGTGGAAT CCAGCAACGTTTGAAGCTATGCATCCTGAAGGAACAGCTCGCAGGATGTCATGGCCATACAAAGTAGAAGGGAAATCCTTCCTTTTCAATTGGCTATTTT GGGTACCTCTAGCTGCTTACACACTCTGGCAGTTTCTGTATTTCCTGATTGTCAATGTCCTTCGGCGTCAGCGACTATTGAGAGATCCAGAAGTCATGAC ATCCTACAGGGAGCTGTCAAAGAAGGCAAGGAAAGCAAACAATGTATGGTGGAGGTTAAGCGGGGTGCTTGGGGATCAGAACAGGATGCTGATGTACATT GTATTCCAAGGGATATTCACAGTTGCAACCATGGCTCTGACAGTGCCCATATTTTTGTCATACAGACTGCATGTAGTGTTCCAATTACTGAAAGTTTCAG CAGCCGTGTGGAACGGTGGGAGCTTCCTCCTGGAAGTAATGCCTAGGCAGGTGATTCTGAAGGAAAAGAAAAAAACAGAAATGAAACCATTAGTACCAGC TGCAGAAGAACAAGACGACGTAGCTTCAACCCCCCTGGTGGAGGAAAGCAGCGACGTGTTGCAGTCCGAGTAG
AA sequence Show only first row Show all	>Lus10017161 pacid=23167469 polypeptide=Lus10017161 locus=Lus10017161.g ID=Lus10017161.BGIv1.0 annot-version=v1.0 MSNSDEEHIEESLVTNGGESTGTMKQRLKDRTKSVVHTKEMLSKQAIQTKQKIAKQAVKIAKQAEEHERFINKVTHFVGVFGFGGFCYLLGARPQDIPYV YCLFYVIFVPLRWIYYRFKKWHYYLLDFCYYANTIFLVNLLLYPKNEKFFMVCFSFAEGPLAWALIVWRCSLVFNSLDKLVSVLIHLLPGLVFFTIRWWN PATFEAMHPEGTARRMSWPYKVEGKSFLFNWLFWVPLAAYTLWQFLYFLIVNVLRRQRLLRDPEVMTSYRELSKKARKANNVWWRLSGVLGDQNRMLMYI VFQGIFTVATMALTVPIFLSYRLHVVFQLLKVSAAVWNGGSFLLEVMPRQVILKEKKKTEMKPLVPAAEEQDDVASTPLVEESSDVLQSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35460			unknown protein		Lus10017161 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	1.0	0.8757
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	4.2	0.8564
AT1G31940			unknown protein		Lus10010425 [exp]	5.0	0.8565
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	5.1	0.8705
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	5.5	0.8067
AT5G20030			Plant Tudor-like RNA-binding p...		Lus10003091 [exp]	6.7	0.8354
AT1G07040			unknown protein		Lus10030795 [exp]	7.9	0.8639
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	8.1	0.8284
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	9.5	0.8413
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	9.5	0.8233

Compare expression of checked genes

Lus10017161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.