Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20610 676 / 0 unknown protein AT5G26160 194 / 3e-50 unknown protein AT1G42550 87 / 7e-17 PMI1 plastid movement impaired1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021568 [exp] 1809 / 0 AT5G20610 827 / 0.0 unknown protein Lus10039886 [exp] 99 / 2e-20 AT1G42550 816 / 0.0 plastid movement impaired1 (.1) Lus10025003 [exp] 96 / 2e-20 AT5G20610 97 / 2e-21 unknown protein Lus10002170 [exp] 97 / 6e-20 AT1G42550 818 / 0.0 plastid movement impaired1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G145500 [exp] 936 / 0 AT5G20610 565 / 0.0 unknown protein Potri.006G224200 [exp] 566 / 6e-180 AT5G26160 641 / 0.0 unknown protein Potri.005G255500 [exp] 93 / 9e-19 AT1G42550 754 / 0.0 plastid movement impaired1 (.1) Potri.002G006100 [exp] 87 / 8e-17 AT1G42550 796 / 0.0 plastid movement impaired1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017162 pacid=23167488 polypeptide=Lus10017162 locus=Lus10017162.g ID=Lus10017162.BGIv1.0 annot-version=v1.0 ATGTTGTCGAGAGTCGAACATGGGAAGAAGACTAGGGATGATGAATCAGTAGAAAATAATTTGTTATTGAATGACTTGCAAACTATAAGCAAAGCTCTGA ACCTTGACAAACAAAACCCATCCACGACTTTACTTCCTACTGCCAGTAGGGAGGAGTCAGGAGAGGAGAAATTGTTACTGAATGAGTTGCAAACTATAAG CAAAGCTCTGTACCTTGATAAACCAAAACCTTCGAGGACTTTACTTCCCACCGCCAGCAGCCGAGCAAAAGCAACTGGAAGACCACCAACCTTAGTCGAA CCCAAAACAAAACCCAAGCCTGGGGGGCTTGTTAATGACGAGTCCTCACGCAAGGACAAGAAGTCGTCTATATGGAACTGGAAAGCATCATTCAGAGCCC TCTCCAGTGTTAAGAACCGCAAGTTCAATTGTTGTTTCTCTCTTCAAGTTCATTCCATCGAAGGCCTTCCCTCGACTTTGGACGGTTGCAGCTTGTGTGT AAATTGGAAGTGGAGGGATGGGGAGTTGGTGACACGTCCTGTGAAATCTTTTGAAGGGACTGCAGAATTTGAAGAGAAGTTAGTGCATACTTGTCTTGTT TATGGCAGTCGGAGTGGTCCTCATCATTCTGCAAAGTATGAGGCCAAACATTTCTCGCTCTTTGCATCTATCTTTCGTATGCCTGAGGTTGATTTGGGGA AGCACAGGGTTGACCTTACTAGGTTGCTTCCTCTCACATTGGAGGAATTGGATGATGAGAAGAGTTCTGGAAAGTGGACTACAAGTTATAAGTTGTCGGG AGAAGCAAAGGGTGCAGTGATGAACTTGAGTTTCAGTTATACAGTTGTTGGAGAGTCTCCGACTGGAAATGGTCACAATGTTCCCGAGGAAGTAAGTATC AAAAGGAATAATCTGAAAACAGCTAAGACAATGCCTAGACTTGGCCAATCTGAAGGAAAGGTTGCATTACATCGTCATGAAAGTCTTACCAATACTTCTA ACAAGCAGTTTCCTGCAAAGCCTCAGCCGGTGAAAAAGGAAAAAGATCTTCATGAAGTTATGCCTGACAAAAATCTAGAACTAGATACGACAAGAAACGT GATGAATGGGAGATTTGATGTCGATAAGTTGGATGCTTCAACAAGTGAAAATGAGCATGATGATAAGCTGCAGTTTCCAACCATATCTGAATCTGGGGAA GCCAATGTTGAAAATGAAAATGGGAATGTTGAATTTTCTATTGCTGAAGAAGGCAACTATTTGCTAAATGAGAGCAACGAAGATGGGAATGTTGAATTTT CTATTGCTGAAGAAGCAAAGGTTTTGCCAAGTGAGAGCAGTAGAACGGAGACCCTTACCTTCCAGGATGTTGGCGTTTCTATTCCAGAGACTGATTTTGC TTCCAAGTTTCAGGCAATTCCTCAAGAGTCTATTAATTGTCAGGCTGAGGAAAAAGGAGATGCTGGTCAAAAAGATGAACTTTTTACCTGTGACTCTGAC TCTGATGATAATCTATGTTCAAAAGAATATGTGATGAAAGAATTAGAATCTATGTTAAACAGTGTTTCAAATCTTGAAACTGAAGCACTTGATTCTTCTG ATGACCTGAAAATTGACAATCTAGTAGACAGGGACAAAAGCATAGTTAACCCGGACGATGCTGATTCTATTGCAACTGAATTTTTAGACATGTTGGGGGT TCAGCATAGTCCATTTGGCTTGAGTTCTGAGAGTGAACCTGAGTCCCCAAGGGAGCAGTTACTAAGGCAATTTGAGAAGGATGCCTTGGCTGGTGGCTTT TCTTTGTTTGACTACAATGCAGATGATTGGGATGATCCGGCGAGTACAAATAATGAGATGAATGAGTCAGGATATGACCAATCGGTATGTGGTTTTGATC TGTCAGCATTCACGGATGATGCAGAAGAAGACCATCATAAAGGAACTCACTCTCAGGGTAAAAAGATTGGAGCTAAGATGTTGGAGGACTTTGAGACAGA GGTTTTAATGCATGAATGGGGCCTGAATGACAAGACATTTGAGTGTTCTCCATCCAAGACTTGTGATGGCGTTGGGGTTCAATGTGATCCATCTGTAGAA GAGCCATATAAATTACCACCTCTATCAGAAGGTTTAGGTCCTTTTCTGCAGACAAAGAATGGTGGTTTTGTACGCTCTATGAATCCGTCACTTTTTGGGA GTGCGAAAAGTGGTGGGAGCTTGATTATACAAGTCTCCAGTCCTGTTGTGGTACCTGCAGAAATGGGCGCTAATGTTACTGATGTACTTGAGCAACTCGC GTCAGTTGGAATTGAGAAGCTCTCTATGCAGGCAAATAAGCTAATGCCTTTGGAGGATATCACTGGGAAAACAATGCAACAGGTTGCTTGGGAAGTTTCT GGTGCTTTAGAGGGACATGATGGGGGGAGTTCTTTCCCGCAGAAACATGAGTTAGGGCATGAGGGATCAGATATGCCAGAGAGGACGAAGAAAAAGCGTT CTAGCTCAACAGGAACTGAGATTGGCTCGGAATATGTGTCTCTCGATGACCTTGCACCATTAGCTATGGATAAGATTGAAGCACTTTCATTGGAGGGTTT GAGAATACAATCCGGGCTGTCTGGCGAGGAAGCAACCGTAGGGGAAATTTCAAGTCTCCATGGCAAAGGAGTTAATGTTGGGAGTTCCCTTGGGTTGGAA GGAACTGCTGGAATGCAGTTGTTGGACATTAAAGACAACGATGGTGACGTTGACGGGTTAATGGGTCTTTCGTTGACTCTTGACGAATGGATGCGGTTGG ACTCTGGTGATATTGGTGATGATAACGATCAGATAAGTGAACGGACTTCAAAGATACTTGCTGCTCATCATGCAAGCTCCTTGGAAATGCTGCAAGGGGG TTCGAAGGGGGAGAAAAGGCGTGGAAAGGGATCCGGTAAAAAATGTGGTTTGCTGGGTAATAACTTTACAGTAGCATTAATGGTTCAACTACGTGATCCT CTAAGAAACTACGAGCCTGTTGGGACGCCAATGCTTGCTCTGATTCAAGTTGAGCGAGTTTTCATCCCACCGAAGCCCAGAATATACTGCAAAGTAGCAG AGTTGAGGGAGAGCGGCAACAACGAGGATGAAGAAGAGTCCGAGTTGACATCGAACGAGGCAAAGGACAGGAGAGTAGTAGAAGAAGAAGATAATAAAAA GCTCTCTATGCAGGCAAATAAGCTAATGCCTTTGGAGGATATCACTGGGAAAACAATGCAACAGGTTGCTTGGGAAGTTTCTGGTGCTTTAGAGGGACAT GATGGGGGGAGTTCTTTCCCGCAGAAACATGAGTTAGGGCATGAGGGATCAGATATGCCAGAGAGGACGAAGAAAAAGCGTTCTAGCTCAACAGGAACTG AGATTGGCTCGGAATATGTGTCTCTCGATGACCTTGCACCATTAGCTATGGATAAGATTGAAGCACTTTCATTGGAGGGTTTGAGAATACAATCCGGGCT GTCTGGCGAGGAAGCAACCGTAGGGGAAATTTCAAGTCTCCATGGCAAAGGAGTTAATGTTGGGAGTTCCCTTGGGTTGGAAGGAACTGCTGGAATGCAG TTGTTGGACATTAAAGACAACGATGGTGACGTTGACGGGTTAATGGGTCTTTCGTTGACTCTTGACGAATGGATGCGGTTGGACTCTGGTGATATTGGTG ATGATAACGATCAGATAAGTGAACGGACTTCAAAGATACTTGCTGCTCATCATGCAAGCTCCTTGGAAATGCTGCAAGGGGGTTCGAAGGGGGAGAAAAG GCGTGGAAAGGGATCCGGTAAAAAATGTGGTTTGCTGGGTAATAACTTTACAGTAGCATTAATGGTTCAACTACGTGATCCTCTAAGAAACTACGAGCCT GTTGGGACGCCAATGCTTGCTCTGATTCAAGTTGAGCGAGTTTTCATCCCACCGAAGCCCAGAATATACTGCAAAGTAGCAGAGTTGAGGGAGAGCGGCA ACAACGAGGATGAAGAAGAGTCCGAGTTGACATCGAACGAGGCAAAGGACAGGAGAGTAGTAGAAGAAGAAGATAATAAAGCAGAAGAGATGGAAGGAAT AGCGCGGTTCCAAATTGCAGAAGTACATGTTGCTGGTATAAAGACCGAACCTGAGAGGAAGGGTTGGGGTACAGCAACACAGCAACAAGCTGGTTCTCGT TGGCTGGTAGCTAATGGAATGGGAAAGGGGAATAAAATGAAGTCAAAAGCTGGAAGCTCTGGTGATAGTGTGTGGAGTTTATCATCATCTCGTGTTCAGC AACTGGGAGGAGGAAAGCAGATTAAGAGGAACCCAAATTTAGTTTTGCCTAGTAAGAAACTGAATTGGTTGAAGTAA
AA sequence Show only first row Show all	>Lus10017162 pacid=23167488 polypeptide=Lus10017162 locus=Lus10017162.g ID=Lus10017162.BGIv1.0 annot-version=v1.0 MLSRVEHGKKTRDDESVENNLLLNDLQTISKALNLDKQNPSTTLLPTASREESGEEKLLLNELQTISKALYLDKPKPSRTLLPTASSRAKATGRPPTLVE PKTKPKPGGLVNDESSRKDKKSSIWNWKASFRALSSVKNRKFNCCFSLQVHSIEGLPSTLDGCSLCVNWKWRDGELVTRPVKSFEGTAEFEEKLVHTCLV YGSRSGPHHSAKYEAKHFSLFASIFRMPEVDLGKHRVDLTRLLPLTLEELDDEKSSGKWTTSYKLSGEAKGAVMNLSFSYTVVGESPTGNGHNVPEEVSI KRNNLKTAKTMPRLGQSEGKVALHRHESLTNTSNKQFPAKPQPVKKEKDLHEVMPDKNLELDTTRNVMNGRFDVDKLDASTSENEHDDKLQFPTISESGE ANVENENGNVEFSIAEEGNYLLNESNEDGNVEFSIAEEAKVLPSESSRTETLTFQDVGVSIPETDFASKFQAIPQESINCQAEEKGDAGQKDELFTCDSD SDDNLCSKEYVMKELESMLNSVSNLETEALDSSDDLKIDNLVDRDKSIVNPDDADSIATEFLDMLGVQHSPFGLSSESEPESPREQLLRQFEKDALAGGF SLFDYNADDWDDPASTNNEMNESGYDQSVCGFDLSAFTDDAEEDHHKGTHSQGKKIGAKMLEDFETEVLMHEWGLNDKTFECSPSKTCDGVGVQCDPSVE EPYKLPPLSEGLGPFLQTKNGGFVRSMNPSLFGSAKSGGSLIIQVSSPVVVPAEMGANVTDVLEQLASVGIEKLSMQANKLMPLEDITGKTMQQVAWEVS GALEGHDGGSSFPQKHELGHEGSDMPERTKKKRSSSTGTEIGSEYVSLDDLAPLAMDKIEALSLEGLRIQSGLSGEEATVGEISSLHGKGVNVGSSLGLE GTAGMQLLDIKDNDGDVDGLMGLSLTLDEWMRLDSGDIGDDNDQISERTSKILAAHHASSLEMLQGGSKGEKRRGKGSGKKCGLLGNNFTVALMVQLRDP LRNYEPVGTPMLALIQVERVFIPPKPRIYCKVAELRESGNNEDEEESELTSNEAKDRRVVEEEDNKKLSMQANKLMPLEDITGKTMQQVAWEVSGALEGH DGGSSFPQKHELGHEGSDMPERTKKKRSSSTGTEIGSEYVSLDDLAPLAMDKIEALSLEGLRIQSGLSGEEATVGEISSLHGKGVNVGSSLGLEGTAGMQ LLDIKDNDGDVDGLMGLSLTLDEWMRLDSGDIGDDNDQISERTSKILAAHHASSLEMLQGGSKGEKRRGKGSGKKCGLLGNNFTVALMVQLRDPLRNYEP VGTPMLALIQVERVFIPPKPRIYCKVAELRESGNNEDEEESELTSNEAKDRRVVEEEDNKAEEMEGIARFQIAEVHVAGIKTEPERKGWGTATQQQAGSR WLVANGMGKGNKMKSKAGSSGDSVWSLSSSRVQQLGGGKQIKRNPNLVLPSKKLNWLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20610			unknown protein		Lus10017162 [exp]	0	1
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	1.7	0.8616
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	5.5	0.8325
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	10.0	0.8185
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014547 [exp]	12.2	0.8390
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	15.5	0.8555
AT4G15240			Protein of unknown function (D...		Lus10039693 [exp]	17.7	0.7934
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	21.5	0.8201
AT3G22520			unknown protein		Lus10006124 [exp]	22.4	0.8024
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	22.5	0.8453
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	22.6	0.8157

Compare expression of checked genes

Lus10017162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.