Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63000 613 / 0 NPL41 NPL4-like protein 1 (.1) AT2G47970 608 / 0 Nuclear pore localisation protein NPL4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021567 [exp] 771 / 0 AT3G63000 666 / 0.0 NPL4-like protein 1 (.1) Lus10027618 [exp] 321 / 9e-110 AT2G47970 289 / 1e-98 Nuclear pore localisation protein NPL4 (.1.2) Lus10027617 [exp] 186 / 2e-51 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213600 [exp] 679 / 0 AT3G63000 596 / 0.0 NPL4-like protein 1 (.1) Potri.014G135590 [exp] 679 / 0 AT3G63000 609 / 0.0 NPL4-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF05021 [flax] [poplar] NPL4 NPL4 family CL0072 [flax] [poplar] Ubiquitin PF11543 [flax] [poplar] UN_NPL4 Nuclear pore localisation protein NPL4
Representative CDS sequence Show only first row Show all	>Lus10017163 pacid=23167475 polypeptide=Lus10017163 locus=Lus10017163.g ID=Lus10017163.BGIv1.0 annot-version=v1.0 ATGATGCTCAGAATCCGCAGCCGAGATGGCCTGGAGCGCGTCTCCGTCGACAACCCCACCACCACCACCGTCGCTCAGCTCAAAACCCTAATTCAGTCAC AGCTTCAAATCCCTATCCACAACCAAACCCTCTCCACCAACCAGAACCTCCTCCTCGCTAAATCCCCTTCCGATCTCCTCAAGTTCACCGACATGGCCGA CCCCTCCACACCCCTCTCCGCCCTTAAACTCGGCCATGGCTCCATCGTCTTCTTGTCCTACGACGGCGAGAGGAACATAGCCGGCCCCACCGTCTTCCCC TCCGGATCATTCGGCCGCAAGATGACCATGGACGATCTGATCGCCAAGCAGATGAAGGTCACCAGGCAGGAGAACCCGCATTGCGACTCTGTTTCCTTCG ATCGCGACTGTGCAAATGCGTTCCAGCACTACGTCAACGAGACCCTCGCTTTCGCGGTCAAGAGAGGCGGATTTATGTACGGGACCGTCTCGGAAGACGG CAAGGTCCAAGTGGATTTCATATACGAGCCCCCGCAGCAAGGAACTGAACAAGTTCTGATGCTTTTGAGGGACTCCAGCGAAGAGAAATCTGTGGACTCC ATTGCTGCTGGTTTAGGGATGAGGAAAGTTGGCTTCATATTCACGCAGACGATATCTCAGGACAAGAAAGATTACACCTTGTCCAATAGAGAGGTTCTTC AAGCTGCGGAGCTTCACGCAGAGAGCCAGTTAAAGGAATGGGTTACTGCGGTTGTGAAGTTGGAGGTGAGCGAGGACGGTGCAGCTGATGTTCACTTTGA AGCTTTTCAGCTAAGTGATATGTGTGTTAGGCTATTTAAGGAAGGATGGTTCGAGACTGAGATTAGAGAAGGTGTGGATCCTAAGTTGTCTATCATGAAG AAGGATGTCGTTCTTGGTGTTAAAGATGTCAAGGAGGTCGACAATGATTTCTTCCTTGTTGTCGTTAAGATTTTGGATCACATGGGGCCTTTGTCATCGA CATTCCCGATAGAGAACAGGGTGAGCCAAGTGACAATGAAGGCACTAAAGAGTCATCTTGAACGTGCAAGAAGTCTTCCATTTGTGAAAAGAATATCTGA CTTCCATCTGCTGCTGTTTCTAGCTAGGTTTCTAGACCATGCTTCTGATGTTCCCGCACTAGCTCAGTGCGTTGTGACACAGACAGCAGTGCCAGAAGGA TATCAAATCCTGATTGAATCCATGGCCAGCACTGCTTGA
AA sequence Show only first row Show all	>Lus10017163 pacid=23167475 polypeptide=Lus10017163 locus=Lus10017163.g ID=Lus10017163.BGIv1.0 annot-version=v1.0 MMLRIRSRDGLERVSVDNPTTTTVAQLKTLIQSQLQIPIHNQTLSTNQNLLLAKSPSDLLKFTDMADPSTPLSALKLGHGSIVFLSYDGERNIAGPTVFP SGSFGRKMTMDDLIAKQMKVTRQENPHCDSVSFDRDCANAFQHYVNETLAFAVKRGGFMYGTVSEDGKVQVDFIYEPPQQGTEQVLMLLRDSSEEKSVDS IAAGLGMRKVGFIFTQTISQDKKDYTLSNREVLQAAELHAESQLKEWVTAVVKLEVSEDGAADVHFEAFQLSDMCVRLFKEGWFETEIREGVDPKLSIMK KDVVLGVKDVKEVDNDFFLVVVKILDHMGPLSSTFPIENRVSQVTMKALKSHLERARSLPFVKRISDFHLLLFLARFLDHASDVPALAQCVVTQTAVPEG YQILIESMASTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	0	1
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034974 [exp]	1.0	0.9080
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	1.4	0.9037
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	1.7	0.9012
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	3.2	0.8934
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10024108 [exp]	3.6	0.8751
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	4.9	0.8852
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	5.3	0.8738
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	5.3	0.8858
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	6.7	0.8726
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	6.7	0.8839

Compare expression of checked genes

Lus10017163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.