Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20540 367 / 7e-126 ATBRXL4, BRX-LIKE4 BREVIS RADIX-like 4 (.1) AT3G14000 336 / 5e-114 ATBRXL2, BRX-LIKE2 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) AT1G54180 330 / 4e-112 ATBRXL3, BRX-LIKE3 ARABIDOPSIS THALIANA BREVIS RADIX-LIKE 3, BREVIS RADIX-like 3 (.1.2) AT1G31880 168 / 6e-49 BRX, NIP3;1, NLM9 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) AT2G35600 147 / 5e-41 BRXL1, ATBRXL1, BRX-LIKE1 ARABIDOPSIS THALIANA BREVIS RADIX LIKE 1, BREVIS RADIX-like 1 (.1) AT2G21030 107 / 9e-28 unknown protein AT5G19420 90 / 2e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 87 / 1e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 74 / 6e-14 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 70 / 9e-13 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021565 [exp] 519 / 0 AT5G20540 420 / 1e-146 BREVIS RADIX-like 4 (.1) Lus10008459 [exp] 315 / 6e-106 AT3G14000 441 / 1e-155 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10000884 [exp] 305 / 1e-101 AT3G14000 439 / 3e-154 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10030349 [exp] 240 / 5e-77 AT1G31880 410 / 5e-144 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10007898 [exp] 214 / 1e-67 AT1G31880 363 / 1e-126 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10039525 [exp] 85 / 1e-17 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 84 / 2e-17 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 84 / 3e-17 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10002751 [exp] 84 / 3e-17 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144900 [exp] 441 / 5e-155 AT5G20540 422 / 2e-147 BREVIS RADIX-like 4 (.1) Potri.018G064900 [exp] 409 / 2e-142 AT5G20540 426 / 1e-148 BREVIS RADIX-like 4 (.1) Potri.003G063200 [exp] 339 / 4e-115 AT3G14000 492 / 4e-175 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.001G170800 [exp] 336 / 5e-114 AT3G14000 467 / 2e-165 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.001G131800 [exp] 257 / 3e-83 AT1G31880 462 / 4e-164 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.003G101500 [exp] 252 / 2e-81 AT1G31880 434 / 8e-153 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.001G026900 [exp] 87 / 3e-18 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 85 / 1e-17 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 84 / 2e-17 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 84 / 3e-17 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3
Representative CDS sequence Show only first row Show all	>Lus10017164 pacid=23167421 polypeptide=Lus10017164 locus=Lus10017164.g ID=Lus10017164.BGIv1.0 annot-version=v1.0 ATGCTGACCTGTATAGCTCGATCCAAACAAGCCGGAGATGAGCCCGACGGAAACGCCAACGCTTCCAATGCCAAAAACAACCAAGCAATCAAATCACTCA CCTCCCAGCTGAAAGACATGGCTCTGAAGGCGTCGGGAGCATACAAGCACTGCGCGCCCTGCTCTACAACACCTAACCAGAACCGGTTCCAAACCAACCC GACGCAGGAACCGGAGGCGGAGTCTGACCGGTTTCGGTGGCAGCTGAAGAGGACGATGAGCTCGACGACACCGAGGACGTGGGGGAAGGAGATGGAGGCG AGGTTGAAGGGGATATCGAGTTCGAGCGGCGAAGGGTCTACGCCAGCCAGCTCCGTCAACGGAAGCGGGCGACGCGTGGAGCCGCCGATCGTGTTGGTGG AAGAGAGCGAGCCCAAGGAATGGGTGGCCCAGGTGGAGCCCGGTGTCCTCATTACTTTCGTCTCGCTTCCTCGCGGAGGCAACGATCTCAGGAGGATAAG GTTCAGCCGAGACATGTTCAATAAGTGGCAAGCTCAGAAATGGTGGGCGGAGAACTATGACAAGGTCATGGAACTTTATAATGTCCAGAGGCTTAGCCGC CAAGCCTTTCCTCTTCCAACACCTCCAAGATCTGAAGACGAGAGCTCCAAAATGGAATCAGCTGAAGACAGTCCTGTAACACCACCATTGAACCGAGAGC GTTTACCTCGTAGGCCAACAGGAATGGGAACGAGCTATTCGTCCTCAGACTCACTTGACTATCATCACCCCATGCAGCAGATGACCCAACAATACACCGA CTCAGTTACCCCAAAACTCTCCAGTATAAGTGGGGCTAAGACTGAAATATCATCTTCTATGGATGCATCTATGCGAAGTAGCTCATCGATGTCTATCAGT AATGCCAGCGATATGGAGAATGAATGGGTTGAACAAGATGAACCAGGCGTGTACATCACCATTAGAGCCTTGCCCGGTGGAAAGAGGGAGCTCAGAAGAG TTAGATTCAGCCGAGAAAAGTTTGGAGAGATGCATGCAAGATTATGGTGGGAAGAGAACCGAGCTAGAATACACCAAAATTACTTGTAG
AA sequence Show only first row Show all	>Lus10017164 pacid=23167421 polypeptide=Lus10017164 locus=Lus10017164.g ID=Lus10017164.BGIv1.0 annot-version=v1.0 MLTCIARSKQAGDEPDGNANASNAKNNQAIKSLTSQLKDMALKASGAYKHCAPCSTTPNQNRFQTNPTQEPEAESDRFRWQLKRTMSSTTPRTWGKEMEA RLKGISSSSGEGSTPASSVNGSGRRVEPPIVLVEESEPKEWVAQVEPGVLITFVSLPRGGNDLRRIRFSRDMFNKWQAQKWWAENYDKVMELYNVQRLSR QAFPLPTPPRSEDESSKMESAEDSPVTPPLNRERLPRRPTGMGTSYSSSDSLDYHHPMQQMTQQYTDSVTPKLSSISGAKTEISSSMDASMRSSSSMSIS NASDMENEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHQNYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10017164 [exp]	0	1
AT3G24460			Serinc-domain containing serin...		Lus10033091 [exp]	8.6	0.7963
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10025467 [exp]	13.0	0.7681
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10033880 [exp]	14.1	0.7654
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	16.7	0.7872
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	19.0	0.7651
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10021470 [exp]	19.3	0.7815
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10008590 [exp]	19.7	0.7827
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	20.6	0.7706
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	21.8	0.7574
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	24.5	0.7724

Compare expression of checked genes

Lus10017164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.