Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13640 986 / 0 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 789 / 0 Lecithin:cholesterol acyltransferase family protein (.1) AT1G04010 79 / 4e-15 ATPSAT1 phospholipid sterol acyl transferase 1 (.1) AT1G27480 45 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021564 [exp] 1372 / 0 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10015639 [exp] 1005 / 0 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10037657 [exp] 990 / 0 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 803 / 0 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043360 [exp] 486 / 6e-167 AT3G44830 581 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10008234 [exp] 83 / 3e-16 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10043361 [exp] 75 / 7e-16 AT5G13640 85 / 4e-20 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10003615 [exp] 81 / 1e-15 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10024927 [exp] 81 / 1e-15 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063100 [exp] 1019 / 0 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.001G171000 [exp] 1000 / 0 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 816 / 0 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Potri.009G150800 [exp] 210 / 3e-64 AT3G44830 204 / 9e-63 Lecithin:cholesterol acyltransferase family protein (.1) Potri.014G195500 [exp] 85 / 8e-17 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.015G121000 [exp] 55 / 1e-07 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 52 / 2e-06 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G014400 [exp] 48 / 2e-05 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 47 / 4e-05 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017165 pacid=23167416 polypeptide=Lus10017165 locus=Lus10017165.g ID=Lus10017165.BGIv1.0 annot-version=v1.0 ATGCCGCTATTGAGGCGGAGGTGGAGAGCTCCGAAATCTGATTCTTCTGCCGTTGACAGAGAGAGGGACCCGTCTTGTCAGATTCGCCGAGGAGAAGGCA CCGACAATGACGTGGTTAATGGAGACGGCGAGAAGTGGAATATAGGAGAGGATAAGCAAGGTAGGTTGAAGCCGAGCCGCGGTGGTGATGGCAAAAGGAA GGATGGGAGGAAGTGGTCGTGCGTTGACAGCTGTTGCTGGTTCATAGGCTTTATATGCTCCTCGTGGTGGTTTTTGCTCTTCCTGTACAATGCAATGCCT TCTTCAATCCCTCAGTTCGTCACGGAGGCCATTACAGGGGGGCCGATGCCTGACCCGCCTGGCCTCAAGTTGAAGAAGGAAGGCTTGATGGTGAAGCACC CAGTGGTCTTTGTCCCTGGGATCGTAACCGGTGGGCTTGAATTGTGGGAGGGACATCACTGTGCAGAAGGATTGTTCAGAAAGCGACTATGGGGTGGCAC TTTTGGTGAAGTGTACAAGAGACCATTATGTTGGGTAGAGCACATGTCACTGGATAATGAAACAGGACTTGACCCCCCTGGTATAAAGGTCAGACCAGTA TCTGGCCTTGTGGCTGCAGACTACTTTGCTGCGGGGTATTTTGTATGGGCAGTTTTAATTGCTAATTTGGCTCAAATAGGATATGAGGAGAAAACCATGT ATATGGCTGCATACGACTGGAGAATGTCATTTCAGAATACAGAGGTCAGGGACCAAACTCTCAGCAGGATGAAAAGTAATATAGAACTCATGGTTGCCAC TAATGGAGGAAACAAGGTTGTCGTCATTCCACATTCAATGGGGGCTCTTTACTTTCTGCATTTCATGAAATGGGTGGAAGCACCTGCTCCAATGGGCGGT GGGGGAGGATCAAATTGGTGTGCTAAGCATATAAAGTCGGTGATGAACATAGGTGGACCTTTTTTAGGGGTACCCAAAGTAGTCTCTGGACTTTTCTCTG GTGAAGGCAGAGATATTGCTGTTGCCAGGGCTTTTGCACCAGGCTTTCTGGACAAGGATTTCTTTAGTCTCCAAACTCTACAACATTTTATGCGCATGAC TCGTACATGGGATTCAACCATGTCTATGATACCAAAAGGTGGGGAAACCATTTGGGGTGGCCTTGATTGGTCACCGGAAGAGGAATATAGTTGTGGCACT AAGAAGTTGAAGAACAACACCCGTTTGGTAGGAGAAAACAGGAAAGGGGGTTTGAGTCCTCCTCAAATAACAAATTATGGGAGAATTATCTCGTTTGGAA AAGATGCAGCCACGCAGCACTCTTCCAAGATTGCCAGGATTGATTTCAGGGATGCAGTTAAGGGAAGTCACCCAGGAAACCACTGTGATATTTGGACCGA GTATCAAGAAATTGGAGTTGGTGGCATCAAAGCTGTTACTGATTACAAAGTGTACACAGCTAGTTCAGTTCTAGATATGCTGGACTTCGTTGCACCCAAG TTAATGGCAAGAGGAAATGCTCATTTTTCGCATGGAATTGCGGACAATCTAGATGACCCAAAATACCAACACTTCAAATACTGGTCAAACCCTTTAGAGA CAAAATTACCAAATGCTCCAGACATGGAGATTTATTCATTGTATGGGGTTGGAATACCCACGGAAAGAGCATATGTATACAAGCAAACCTCAGCAGGGGA ATGCGCAATTCCTTTCCAGATTGATGCATCGGCAGGTGATGATAGCGAGAGGTCTTGCCTAAAAGGTGGAGTATTGTCAGTGAACGGAGATGAGACGGTG CCAGTTATAAGTGCTGGATTCATGTCTGCAAAAGGGTGGAGAGGGAAAACGAGATTCAACCCATCAGGGATTCGTACTCACATAAGGGAATATGATCATG CACCACCAGCCACCCTCCTGGAAGGAAGGGGAACCCAAAGCGGTGCTCATGTTGACATAATGGGCAATTTTGCATTGATAGAGGATATCATCAGAGTTGC AGCAGGGGCTTCTGGAGAAGATTTGGGAGGAGACAGGGTTTACTCGGACATTTTTAAATGGTCTGACAAGATTAAGCTGCGGCTTTAA
AA sequence Show only first row Show all	>Lus10017165 pacid=23167416 polypeptide=Lus10017165 locus=Lus10017165.g ID=Lus10017165.BGIv1.0 annot-version=v1.0 MPLLRRRWRAPKSDSSAVDRERDPSCQIRRGEGTDNDVVNGDGEKWNIGEDKQGRLKPSRGGDGKRKDGRKWSCVDSCCWFIGFICSSWWFLLFLYNAMP SSIPQFVTEAITGGPMPDPPGLKLKKEGLMVKHPVVFVPGIVTGGLELWEGHHCAEGLFRKRLWGGTFGEVYKRPLCWVEHMSLDNETGLDPPGIKVRPV SGLVAADYFAAGYFVWAVLIANLAQIGYEEKTMYMAAYDWRMSFQNTEVRDQTLSRMKSNIELMVATNGGNKVVVIPHSMGALYFLHFMKWVEAPAPMGG GGGSNWCAKHIKSVMNIGGPFLGVPKVVSGLFSGEGRDIAVARAFAPGFLDKDFFSLQTLQHFMRMTRTWDSTMSMIPKGGETIWGGLDWSPEEEYSCGT KKLKNNTRLVGENRKGGLSPPQITNYGRIISFGKDAATQHSSKIARIDFRDAVKGSHPGNHCDIWTEYQEIGVGGIKAVTDYKVYTASSVLDMLDFVAPK LMARGNAHFSHGIADNLDDPKYQHFKYWSNPLETKLPNAPDMEIYSLYGVGIPTERAYVYKQTSAGECAIPFQIDASAGDDSERSCLKGGVLSVNGDETV PVISAGFMSAKGWRGKTRFNPSGIRTHIREYDHAPPATLLEGRGTQSGAHVDIMGNFALIEDIIRVAAGASGEDLGGDRVYSDIFKWSDKIKLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10017165 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	2.2	0.9459
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030455 [exp]	3.0	0.9224
AT3G08650			ZIP metal ion transporter fami...		Lus10003243 [exp]	6.3	0.9180
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10013805 [exp]	6.9	0.9236
AT4G24110			unknown protein		Lus10001676 [exp]	8.8	0.9355
AT4G10265			Wound-responsive family protei...		Lus10018531 [exp]	9.3	0.9285
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	9.8	0.9079
AT5G08570			Pyruvate kinase family protein...		Lus10013449 [exp]	9.8	0.9281
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	17.1	0.9236
AT3G08650			ZIP metal ion transporter fami...		Lus10035606 [exp]	21.3	0.9254

Compare expression of checked genes

Lus10017165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.