Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06005 385 / 1e-133 FIP1 FRIGIDA interacting protein 1 (.1.2) AT5G20580 338 / 2e-115 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021558 [exp] 448 / 3e-157 AT2G06005 428 / 3e-149 FRIGIDA interacting protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G056500 [exp] 439 / 3e-155 AT2G06005 514 / 0.0 FRIGIDA interacting protein 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017167 pacid=23167455 polypeptide=Lus10017167 locus=Lus10017167.g ID=Lus10017167.BGIv1.0 annot-version=v1.0 ATGTCTACGGAGAGGCACAGTCATCCTCCCTCCACTTCTCGTGAAGACGACTCCCTGTTCTTAGACATCCTCCACGAAGCCCCTTTGTTCGGCCACCGCA AATCCAGAAGTCTCTTTGGTGCCATTCTATACTCTCTCCTACTGGCAAGTTATGCTGTTCTGGGCGCTGCAGCCCCTTATCTCTTCCACTCTATCACCAA TTGGGTCCCTTCTCTACTTTGCAGTTCTGATGTTCTTCTCCTAGTTGTCACAGGCATCTTCCAGCAATATTTTGTTTCTCAAGTCCAGAAAATACGACTC CAGGGTTACTATAGTTTCAGCCAGAAGCTGAAACACATTGTGCGCCTCCCATTTGCTATTACTGCTTACGGAACTGGACTGATGCTTCTGGTTGTTGTAT GGGATCCCCAAATCAAATTCCTTACGACCCCTGCATTACTGAGAATTATCATGTTGGCTGAAGCAGTTTGTGCTACGTCCTTTATGAGTGTTTATATTGG CTATTTGCATCAGTACAATTCGGTAAACTCCCAGCCTGATATTTTGAAGTCGCTGTATTCTCCACTTCAACAATCAAGTCCTTTAGAAGGTTTGAGGTAC CAAGATGGTGGTAGACTTTCTGACCAGCAAATGGCATTACTCCAATATCAGCGTGAGAATCTCCATTTCTTGAGTGAAGAGGTGCTGCGTTTGCAAGAAT GTTTAAGCAAATATGAGCGGTCCAGCGAGGGTAGCACACCTCAAGTTGATGTTGCACATTTGCTAGGTGCCCGTGAGCAGGAGTTAAGGACAGTAACTGC TGAGATGAATCAACTACAATCTGAGCTAAGGCTTGCTCGGTCTGTGATAGCTGATAGGGAGTCTGAGTTCCAGCGGTACGTGGAAGAGAATGAGAGGCTG AGAGCTATCTTAGGAGAATGGAGTACTCGTGCTGCAAAGCTTGAGCGAGCACTGGAGGCAGAGCGGATGTCGAATCTGGAATTGCAAAAAAAGGTTTCAT CATATTCCAGCAAAAATCAATCAAATCCTTCAAACAGAACCGATTGA
AA sequence Show only first row Show all	>Lus10017167 pacid=23167455 polypeptide=Lus10017167 locus=Lus10017167.g ID=Lus10017167.BGIv1.0 annot-version=v1.0 MSTERHSHPPSTSREDDSLFLDILHEAPLFGHRKSRSLFGAILYSLLLASYAVLGAAAPYLFHSITNWVPSLLCSSDVLLLVVTGIFQQYFVSQVQKIRL QGYYSFSQKLKHIVRLPFAITAYGTGLMLLVVVWDPQIKFLTTPALLRIIMLAEAVCATSFMSVYIGYLHQYNSVNSQPDILKSLYSPLQQSSPLEGLRY QDGGRLSDQQMALLQYQRENLHFLSEEVLRLQECLSKYERSSEGSTPQVDVAHLLGAREQELRTVTAEMNQLQSELRLARSVIADRESEFQRYVEENERL RAILGEWSTRAAKLERALEAERMSNLELQKKVSSYSSKNQSNPSNRTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	1.0	0.9510
AT2G24550			unknown protein		Lus10020142 [exp]	3.5	0.9428
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	4.5	0.9489
AT4G32190			Myosin heavy chain-related pro...		Lus10006190 [exp]	4.9	0.9401
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	4.9	0.9371
AT3G56680			Single-stranded nucleic acid b...		Lus10038997 [exp]	5.0	0.9374
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	7.5	0.9329
AT1G27290			unknown protein		Lus10003121 [exp]	8.4	0.9342
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	9.5	0.9328
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	10.0	0.9280

Compare expression of checked genes

Lus10017167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.