Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64870 104 / 1e-25 unknown protein AT5G13620 96 / 3e-22 unknown protein AT1G49290 82 / 2e-17 unknown protein AT5G11220 81 / 3e-17 unknown protein AT3G45200 68 / 1e-12 unknown protein AT5G24355 57 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021560 [exp] 520 / 0 AT1G49290 125 / 4e-33 unknown protein Lus10002022 [exp] 99 / 2e-23 AT1G64870 241 / 3e-78 unknown protein Lus10041678 [exp] 99 / 3e-23 AT1G64870 237 / 6e-77 unknown protein Lus10009296 [exp] 93 / 2e-21 AT1G64870 235 / 3e-76 unknown protein Lus10036502 [exp] 69 / 9e-14 AT1G49290 84 / 1e-19 unknown protein Lus10041424 [exp] 62 / 1e-10 AT1G49290 90 / 7e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252800 [exp] 129 / 7e-35 AT1G64870 261 / 6e-87 unknown protein Potri.008G045000 [exp] 99 / 3e-23 AT5G13620 172 / 9e-51 unknown protein Potri.010G216400 [exp] 92 / 9e-21 AT1G64870 167 / 3e-49 unknown protein Potri.001G155600 [exp] 78 / 4e-16 AT5G13620 92 / 3e-21 unknown protein Potri.014G054900 [exp] 65 / 8e-12 AT1G64870 91 / 4e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017168 pacid=23167487 polypeptide=Lus10017168 locus=Lus10017168.g ID=Lus10017168.BGIv1.0 annot-version=v1.0 ATGTTGTTTCCTTCCCCCCCGACCTTTAATTGCAGTGAAATGGAGCCGTTAGTGTTGACGCAAGATGAAATCAACACTTTTCATTCCATCGACCGACAAG CGTATTTGATCCTCACGCTGGGGCTCTATCGTGACCCTATGGAGTGCATGCAGATAATTGCGTTTTGGTACTGGCTTGAGATCCTGTGCAACTCGTGTGA ATTCATCCACACCATTCTCTATCTCCCGTGGGCCTTGATCAACGACCTCGCCGACGAGGCCGTCGCTTGCCTCAACTGCATCAACTCCGACGCCTTTCTC ATCCCGACGATGGGCGAAAGCGTCGATGGCGGTGGGATCCCGTTGACCGTTGCGGTGTTGGACAAGGACCATATCATCAGTCTCCCTTACTTTTTTTACC ACAGGGTAGAGGCAAGAGAGAAGATAGCTAAACAGTATAACAACGTCTCTGTTAGAGCTCTCACTGACTTGATGCACATGGTTTTTGAGAATAATGCTAG GGCGGCGGCCGCAGCGGCCGCGGCAGCCATGCAGCAGCAGATGGCTGCCGCTTCTTCTTCTGTGGTCGGTGGTCTCCACCACATCATTGATTCGATGAGC AATATGACGTTGCACCCACCACAACGTACTGAGAACCAACCACCGCAGTTCGACGGGGGCTATCAAATAGAGGAGGAGGAGGAGGAGGAGTTGGAGGCCG AGGAGGAGCATGAGCTGGAGCCAGAGGCAGAGAACAGGACGATGTTCGCAACGTTCTCGAAAGGATACCCTGTTGTAGCAAGAGAGTTGCGGGAGTTCCT GATGAAGAACTTCGGCGCAGACTGCATCGAGTCGCTGCGTATGCAAGAGGTGGCTCCCCCGAAGCAATCACTGTATGCGAAAATAGTGTTCAGGTTTCGT GCGACAATGGATATGGTCCTGAATGGTATGGCCAAAGTTAAGTTCAACATTAACGGAAAACATGTCTGGGTCAGGAAGTTCGTCCCCTATAAGCGCCCTT CCAACAAGTCCTTTGGTACTGGTGCTAGTTAG
AA sequence Show only first row Show all	>Lus10017168 pacid=23167487 polypeptide=Lus10017168 locus=Lus10017168.g ID=Lus10017168.BGIv1.0 annot-version=v1.0 MLFPSPPTFNCSEMEPLVLTQDEINTFHSIDRQAYLILTLGLYRDPMECMQIIAFWYWLEILCNSCEFIHTILYLPWALINDLADEAVACLNCINSDAFL IPTMGESVDGGGIPLTVAVLDKDHIISLPYFFYHRVEAREKIAKQYNNVSVRALTDLMHMVFENNARAAAAAAAAAMQQQMAAASSSVVGGLHHIIDSMS NMTLHPPQRTENQPPQFDGGYQIEEEEEEELEAEEEHELEPEAENRTMFATFSKGYPVVARELREFLMKNFGADCIESLRMQEVAPPKQSLYAKIVFRFR ATMDMVLNGMAKVKFNINGKHVWVRKFVPYKRPSNKSFGTGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13620			unknown protein		Lus10017168 [exp]	0	1
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009470 [exp]	2.6	1.0000
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	4.1	1.0000
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	5.5	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	6.0	1.0000
					Lus10002413 [exp]	7.5	1.0000
AT3G49055			unknown protein		Lus10011651 [exp]	8.0	1.0000
					Lus10001326 [exp]	8.7	1.0000
					Lus10003843 [exp]	9.5	1.0000
					Lus10022996 [exp]	9.5	1.0000
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	9.9	0.9986

Compare expression of checked genes

Lus10017168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.