Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06040 411 / 2e-133 unknown protein AT5G21900 245 / 1e-72 RNI-like superfamily protein (.1) AT1G21410 81 / 6e-16 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 77 / 9e-15 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G23340 75 / 4e-14 RNI-like superfamily protein (.1) AT3G58530 69 / 3e-12 RNI-like superfamily protein (.1) AT4G15475 69 / 9e-12 F-box/RNI-like superfamily protein (.1) AT2G25490 66 / 5e-11 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT4G30640 56 / 3e-08 RNI-like superfamily protein (.1) AT5G25350 55 / 1e-07 EBF2 EIN3-binding F box protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033320 [exp] 733 / 0 AT2G06040 517 / 7e-174 unknown protein Lus10034779 [exp] 683 / 0 AT2G06040 471 / 5e-156 unknown protein Lus10021558 [exp] 186 / 7e-52 AT2G06005 428 / 3e-149 FRIGIDA interacting protein 1 (.1.2) Lus10018942 [exp] 76 / 2e-14 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10028645 [exp] 75 / 4e-14 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10012764 [exp] 74 / 2e-13 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 69 / 4e-12 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 67 / 3e-11 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10012294 [exp] 64 / 1e-10 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142200 [exp] 518 / 1e-173 AT2G06040 544 / 0.0 unknown protein Potri.006G220600 [exp] 389 / 5e-126 AT2G06040 427 / 1e-139 unknown protein Potri.005G088800 [exp] 75 / 5e-14 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 68 / 6e-12 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.018G027700 [exp] 68 / 1e-11 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.002G074700 [exp] 67 / 1e-11 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.006G254100 [exp] 66 / 4e-11 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.007G075600 [exp] 60 / 1e-09 AT5G23340 291 / 5e-97 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 60 / 2e-09 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 55 / 1e-07 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017169 pacid=23167391 polypeptide=Lus10017169 locus=Lus10017169.g ID=Lus10017169.BGIv1.0 annot-version=v1.0 ATGGTTTTGCTTCGTTCCCCAGAAGTCACTTCAAAATCTAAATCTAAAGAATCCGATGATGATCAAGAACCCTCCGATGATAATCAAGAACCCTCCGCCG CTCATCAGCTAGAAGCTCCTTCATCGGAGGTCTCTCCTTTCGACTCTTTTCTCGCCATCACTACCAGATGGAGGGCCTTTCTTGCTTCAATATCACCTAC CACAGACCACACGTCTCAGACTGCTGGGCGCAAGAGGAAGATCGCCGATCACGTAGAAAAGGGCTTTAAGGAATTGAGTTCTGATGTGAATCCGAGTGAA AAACGCGCTAGATGGTTGAGTAGTGAAGAGAAAGGGATGGGGAATTTGGAGGAAGTGGGGGATTTGTATTTTTTTGTTAAGAAGGAGATCTCCGATAAAA ATTCTTTCAGAAACCCTAATCATTCTTCCACCGGCACCAAGGGGAATTTCTCCGCAAAAGAGCAGCAGAGACTGAAAGAGTTACTTACGCTGGTAGAAGG CGATGAGAGTTATAATAGCAGTACAGCTGAATCAATGGGAAACCGATTTACAGTGGAAAATGTATCTGGTTCACGAATGGGCCAGTTCAAGGTAGCCGCA CGGAAGAATGGCGCTCTATTTGCTCACGGGGAAGAGAATCATCAAGATTTGCCCACTCCTGGTGTTAAATCTCCTAAGGAAGAGCATAAGCGAGAAGACG GGCTGGATGTGTTATTGGCTGTTGTTAAGGCTTTTAACGCTATAGACAAGATGAACCTGCTAAGCGCGAAACCCACTCCTGACCAACCCGAGTCTGTTGC AATGAACTGGAGTCCCAGAGAAGATGCTGGCCTTGACTGTTCAAAAACATGGGTCCCTTCGTTGCGGCAACTCTGCTTGGAATGTCTCGCCCAAAATGCT GATGCAATCACTTCACTCGAAAATATTCCTGATGTTTACAGGCATGCGCTTTCCAAGTTGCTTGGCGATTCTCGGAAGATGAATACACATTTTTTAAAGC TTCTTGTCCGTGGCTCTCCTTCTGAAATAAGAATAAGGGATTGTTCATGGCTAACTGAGGAAGAGTTCAGTGATTGTATTCAGGGCCTTGACACCACCAA TTTAGAGGTTCTGCAACTCGACTTTTGTGGCCGAAGCTTGCCAGATTATGTTTTAGTTTCTAGTTTTGCTGGGTCCCCAATAAGATTTCCTGTACTGACT ACTGTATCCCTGAGTGGTGCTTATCGGCTGTCAGATGTTGGACTCAGATCACTTATATCTGCTACTCCTGTACTACAATGCCTTAATCTTAGCCATTCTT CTCTTATTGCTGCAACTAGTATCAGCATTTTGGCAGACTCATTGGGATCTAATTTGAAAGAGTTGTATCTTAGTGACTGCCACAGCATTGTTGCTATGGA TATGCTACCAGCACTGTTGAGGCTTCAACATCTGGAAGTGCTGTCATTGAGTGGTATTGAAACAGTTAGTGATACATTTATTCTGTGGTTTTGTGCTGAG CGTGGGGATGCTATGAAGGAGCTTGTTCTTTCGGACTGTGTGAAACTAACTGATACTTCCTTGCAAGCCATAGCTGCAACATGTCCTCAACTACTTTCAC TCCATATTGCAAATCTGCGGAAGTTGACTGATTCAGCATTGGGATATCTTGCAAATGGGTGTCGAAACATTCAAACGCTAAGACTCTGCCACAACAAATT CAGTGATGAAGCAGTTGCAGCTTTCATAGAAGCCTCCGGGGAGGCATTGAAGGATGTTTCACTGAATAATGTCAAGCAGGTTAGTCACAACACTGCAGTG GCTATAGGTAGACGTACGAGAGATTTGCAGAGTTTGGACATCTCATGGTGCCGGAACTTGGAGGATGAGGCGGTTGGGATGATTGTGGATAGCTGTTTGT CATTGAAGGTGCTCAAAGTTTTTGGGTGTGATCAGCTAACAGATGCGTTCATAAACGACCACTCCAATCGAGTAGTGGAAATCATTGGTAAGAAGATGAG TCCAACATTAGCACATGTGAGAAATCACAGGGTTGATTTGCAGGCATACCCAACGTACTATACATCGATGCTATCCTCCATGTAA
AA sequence Show only first row Show all	>Lus10017169 pacid=23167391 polypeptide=Lus10017169 locus=Lus10017169.g ID=Lus10017169.BGIv1.0 annot-version=v1.0 MVLLRSPEVTSKSKSKESDDDQEPSDDNQEPSAAHQLEAPSSEVSPFDSFLAITTRWRAFLASISPTTDHTSQTAGRKRKIADHVEKGFKELSSDVNPSE KRARWLSSEEKGMGNLEEVGDLYFFVKKEISDKNSFRNPNHSSTGTKGNFSAKEQQRLKELLTLVEGDESYNSSTAESMGNRFTVENVSGSRMGQFKVAA RKNGALFAHGEENHQDLPTPGVKSPKEEHKREDGLDVLLAVVKAFNAIDKMNLLSAKPTPDQPESVAMNWSPREDAGLDCSKTWVPSLRQLCLECLAQNA DAITSLENIPDVYRHALSKLLGDSRKMNTHFLKLLVRGSPSEIRIRDCSWLTEEEFSDCIQGLDTTNLEVLQLDFCGRSLPDYVLVSSFAGSPIRFPVLT TVSLSGAYRLSDVGLRSLISATPVLQCLNLSHSSLIAATSISILADSLGSNLKELYLSDCHSIVAMDMLPALLRLQHLEVLSLSGIETVSDTFILWFCAE RGDAMKELVLSDCVKLTDTSLQAIAATCPQLLSLHIANLRKLTDSALGYLANGCRNIQTLRLCHNKFSDEAVAAFIEASGEALKDVSLNNVKQVSHNTAV AIGRRTRDLQSLDISWCRNLEDEAVGMIVDSCLSLKVLKVFGCDQLTDAFINDHSNRVVEIIGKKMSPTLAHVRNHRVDLQAYPTYYTSMLSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06040			unknown protein		Lus10017169 [exp]	0	1
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10001511 [exp]	8.2	0.9123
					Lus10032968 [exp]	11.7	0.9079
					Lus10026844 [exp]	14.3	0.9078
					Lus10002313 [exp]	16.5	0.9078
					Lus10017801 [exp]	16.7	0.8470
					Lus10006296 [exp]	18.4	0.9078
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	19.4	0.8866
					Lus10017800 [exp]	19.6	0.8858
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	20.2	0.9078
AT1G16260			Wall-associated kinase family ...		Lus10009751 [exp]	21.4	0.7758

Compare expression of checked genes

Lus10017169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.