Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11650 250 / 5e-84 ATOSM34 osmotin 34 (.1) AT1G75050 160 / 6e-49 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 158 / 4e-48 PR-5, PR5 pathogenesis-related gene 5 (.1) AT4G38660 156 / 4e-46 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G77700 148 / 5e-43 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 145 / 5e-43 ATLP-3 thaumatin-like protein 3 (.1) AT1G19320 145 / 6e-43 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 146 / 2e-42 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 145 / 3e-41 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G20030 138 / 1e-39 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006302 [exp] 325 / 6e-114 AT4G11650 294 / 3e-101 osmotin 34 (.1) Lus10007034 [exp] 309 / 3e-107 AT4G11650 293 / 5e-101 osmotin 34 (.1) Lus10006690 [exp] 305 / 7e-106 AT4G11650 292 / 1e-100 osmotin 34 (.1) Lus10024511 [exp] 250 / 9e-84 AT4G11650 315 / 5e-109 osmotin 34 (.1) Lus10005140 [exp] 167 / 4e-52 AT4G11650 117 / 6e-33 osmotin 34 (.1) Lus10023897 [exp] 165 / 1e-50 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 157 / 7e-47 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 153 / 7e-45 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 150 / 1e-44 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107800 [exp] 319 / 1e-111 AT4G11650 291 / 1e-100 osmotin 34 (.1) Potri.001G107950 [exp] 319 / 1e-111 AT4G11650 287 / 6e-99 osmotin 34 (.1) Potri.001G107600 [exp] 267 / 9e-91 AT4G11650 356 / 1e-125 osmotin 34 (.1) Potri.001G102400 [exp] 263 / 6e-89 AT4G11650 360 / 2e-127 osmotin 34 (.1) Potri.018G096063 [exp] 253 / 2e-85 AT4G11650 314 / 2e-109 osmotin 34 (.1) Potri.015G000800 [exp] 154 / 8e-46 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G004800 [exp] 154 / 1e-45 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G222100 [exp] 150 / 6e-45 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 150 / 8e-45 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 152 / 1e-44 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10017170 pacid=23167419 polypeptide=Lus10017170 locus=Lus10017170.g ID=Lus10017170.BGIv1.0 annot-version=v1.0 ATGGCTGCCTTGTCCCTAGTATTGAAAACCCTCACCTTTTTAATTTTCGCATCTTCAACCACCAATGCTGTCAAATTCGACATAACAAACAAGTGTCCTT ACACCGTATGGGCAGCGGCAGCCGCCACGCCTGGCTCCCCATTTAGCGGTGGCAAACGGCTTAACAACGGCGAGACATGGACCATCAACGACGTCCCCGC AGGGATCACACAAGCCCGAATATGGGCCCGCACCGACTGCAACTTCGACGCAGCCGGGAAAGGGAAGTGCCAGACTGGCGACTGCCAGGGCGTCCTTGAG TGTAAAAGCTACGGTGCGGCTCCCAACACCTTGGCAGAGTTCGCGTTGAAGCAGTATATGGACCGGGATTTCATCGACATCTCGGTGATCGACGGGTTCA ACGTGCCAATGGAGTTCAGCTCGGCGTCCCCCAACTGTGGGAGGGTGATGAGGTGCACGGGCGACATCATAGGACAGTGTCCAAATGAGCTCAAGGTTGA TGGTGGTTGCAATGGTGCTTGTCCGCAGTTGAAGAGAGAGGAGTTTTGTTGCAACAGTGGTAACTGTGGGCCCACACCTTTGTCGAAGTATTTCAAGGAT AGATGCCCTGATGCTTATAGTTACCCTAAGGATGACCCCACCAGCCTTTTTACCTGCCCGTTTGGGGTTGATTATAAGGTTATCTTCTGTCCTTAG
AA sequence Show only first row Show all	>Lus10017170 pacid=23167419 polypeptide=Lus10017170 locus=Lus10017170.g ID=Lus10017170.BGIv1.0 annot-version=v1.0 MAALSLVLKTLTFLIFASSTTNAVKFDITNKCPYTVWAAAAATPGSPFSGGKRLNNGETWTINDVPAGITQARIWARTDCNFDAAGKGKCQTGDCQGVLE CKSYGAAPNTLAEFALKQYMDRDFIDISVIDGFNVPMEFSSASPNCGRVMRCTGDIIGQCPNELKVDGGCNGACPQLKREEFCCNSGNCGPTPLSKYFKD RCPDAYSYPKDDPTSLFTCPFGVDYKVIFCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10017170 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10037323 [exp]	2.4	0.8630
					Lus10019981 [exp]	5.3	0.8812
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10031963 [exp]	8.2	0.6773
AT2G26820		ATPP2-A3	phloem protein 2-A3 (.1)		Lus10026891 [exp]	8.7	0.8211
AT4G34480			O-Glycosyl hydrolases family 1...		Lus10039923 [exp]	10.3	0.6230
AT1G11340			S-locus lectin protein kinase ...		Lus10030766 [exp]	16.6	0.8147
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	22.0	0.7892
					Lus10040397 [exp]	24.2	0.7879
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	26.2	0.7879
AT1G04670			unknown protein		Lus10004041 [exp]	28.0	0.7879

Compare expression of checked genes

Lus10017170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.