Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35570 817 / 0 O-fucosyltransferase family protein (.1) AT2G37980 610 / 0 O-fucosyltransferase family protein (.1) AT3G54100 592 / 0 O-fucosyltransferase family protein (.1) AT5G01100 571 / 0 O-fucosyltransferase family protein (.1) AT1G14020 398 / 5e-132 O-fucosyltransferase family protein (.1) AT5G15740 396 / 3e-131 RRT1 O-fucosyltransferase family protein (.1) AT1G22460 397 / 2e-130 O-fucosyltransferase family protein (.1) AT3G02250 380 / 1e-124 O-fucosyltransferase family protein (.1) AT5G64600 379 / 4e-124 O-fucosyltransferase family protein (.1) AT2G03280 377 / 4e-124 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021557 [exp] 1198 / 0 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 590 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 589 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 589 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 588 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 531 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 520 / 1e-178 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 393 / 1e-129 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 393 / 1e-129 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142400 [exp] 813 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 573 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 571 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 408 / 9e-136 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 400 / 3e-132 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 399 / 4e-132 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 394 / 2e-130 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 393 / 9e-130 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 391 / 3e-129 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 390 / 3e-128 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017171 pacid=23167403 polypeptide=Lus10017171 locus=Lus10017171.g ID=Lus10017171.BGIv1.0 annot-version=v1.0 ATGGGTCACCACTCTCATTCTCATCTCCACAACACCACCACCACCAGCGATGGCGTCCCTCAGCGGGTCAATAGCAGCCCTCGTTTCTCAGGCTCCATGA CTCGCCGGGCCCACTCCTTTAAGCGCAACCCAAACCCCGCCGTCGGTAATTCCAACAACGGCGGAAGCACCACCAGCAGCAGCGCTGCTCACACCGCCGC CAATAACAGCTCCACCGTAAGTCCAAGGTTTGCATCCTCTGGTGACGATATCAATCTCCAGATCAGCTCTCCTAGATCTGAAGTCTTGGACCGCCAGCAC CTCGTCCAGAGAATTAACGCTAAGACTAGGAAGGGCAGTGGTGGAATTGGATCCGTCGTCGGAGAATTTGAGCTCAAGGAGCGTAAGAAGCTCGGGCAGT GGATGGTTTTAGTGTTCTGCAGCCTTTGTTTGTTTCTCGGCGTTGTTAAGATTTGCGCCGGTGGTTGGTTTGGATCTTCCCTTGATCGCCCCACCTACCA CCAGGATTCGGCGGATTCTATTCTCCATCTGAATTTGGAGGAGAACTCCCAGAGTTCTGATACCGTTGAATATAAAGAAAATGGTGATGGGGATAGACAC CTTAAAGGGTTGACCGCAGACACTATCAGCGATATCGGCAAGGTTGAAGATGTGGATAGAAATCTGAATATGATGACAGCAGGCATAGGTCAGATTAATG ATGGCAAAGTTGATGTAAGCCTTGGAAGTTTCAATCTCATTTCTTTCTATAACTACTTCAATTCTGAGTTTTCAGGTATCTGGGCTAGACCTGACAGAGA GAATTTCACCCAATGCATCGACCTTCCGAGAAGCCATAAAAAGCTAGATATGAAAACAACTGGTTATATCCTTATCAATGCTAATGGGGGCTTAAATCAG ATGAGGTTCGGGATCTGTGATATGGTTGCTGTGGCTAAGGTTATGAAGGCAACGTTGGTCCTTCCTTCTCTTGATCACACCTCATACTGGGCTGATGACA GTGACTTTAAGGATCTCTTCAATTGGAAACATTTCATTGAGACGCTACAAGATGAAGTACACATTGTTGAGACTTTGCCGGCAGCATATTCAAGCTTGGA GCCTTTTGTTAAAACACCTATTTCTTGGTCTAAGGTTAGTTATTACAAAAATGAGGTCTTGCCACTGCTGAAGCACCACAAAGTGGTCTACTTTACCCAC ACTGATTCTCGTATTGCAAACAATGGAGTCCCAGATTCAATCCAGAAGCTAAGATGTCGTGTGAATTATAGGGCATTGAAATATGCCGAGCCGATAGAAG AACTGGGAAACACACTGGTTGCGAGAATGAGAGGAGATGAAAATCCTTACCTTGCCCTTCATTTGAGATATGAGAAGGATATGCTGGCATTCACCGGCTG CAGTCATAGTTTGACTGCAAAGGAAGACGAGGAGCTACGAATAATGCGTTATGAAGTGAATCATTGGAAGGAGAAAGAGATAAATGGGACAGAAAAAAGA TTGCTTGGTGGTTGTCCATTGACCCCTAGGGAGACTTCACTACTGCTCAGAGCACTGGGTTTCCCATCCAGCACTAGGATCTACTTGGTAGCTGGTGAGG CTTATGGGAACCAGAGTATGCAGTATCTAGAGGAAGACTTTCCCAACATTTTCTCACACTCATCTCTCGCTACTGAAGAGGAGCTGGAACCTTTCAAGAA TCATCAAAACATGTTGGCTGGTATAGATTACGTTGTTGCTCTTGAAAGTGATGCCTTTGTCTTTACTTATGACGGGAATATGGCAAAGGCTGTTCAGGGC CATCGACGATTCGAGAACTTCAAGAAGACCATCGACCCCGACAGGATGAACTTTGTGAAACTAGTGGATAAGCTAGATGAAGGGAACTTATCATGGAAAA AGTTCACTTCAAAGGTAAAGAAGCTTCACCGAGACCGAAATGGAGCACCTTATTTTAGGGAGGCGGGTGAGGTTCCGAAACTGGAGGAAAGTTTCTATGC CAATCCTCTTCCAGGATGCCTATGTGAAAAGGGAAGAAAGAAATAA
AA sequence Show only first row Show all	>Lus10017171 pacid=23167403 polypeptide=Lus10017171 locus=Lus10017171.g ID=Lus10017171.BGIv1.0 annot-version=v1.0 MGHHSHSHLHNTTTTSDGVPQRVNSSPRFSGSMTRRAHSFKRNPNPAVGNSNNGGSTTSSSAAHTAANNSSTVSPRFASSGDDINLQISSPRSEVLDRQH LVQRINAKTRKGSGGIGSVVGEFELKERKKLGQWMVLVFCSLCLFLGVVKICAGGWFGSSLDRPTYHQDSADSILHLNLEENSQSSDTVEYKENGDGDRH LKGLTADTISDIGKVEDVDRNLNMMTAGIGQINDGKVDVSLGSFNLISFYNYFNSEFSGIWARPDRENFTQCIDLPRSHKKLDMKTTGYILINANGGLNQ MRFGICDMVAVAKVMKATLVLPSLDHTSYWADDSDFKDLFNWKHFIETLQDEVHIVETLPAAYSSLEPFVKTPISWSKVSYYKNEVLPLLKHHKVVYFTH TDSRIANNGVPDSIQKLRCRVNYRALKYAEPIEELGNTLVARMRGDENPYLALHLRYEKDMLAFTGCSHSLTAKEDEELRIMRYEVNHWKEKEINGTEKR LLGGCPLTPRETSLLLRALGFPSSTRIYLVAGEAYGNQSMQYLEEDFPNIFSHSSLATEEELEPFKNHQNMLAGIDYVVALESDAFVFTYDGNMAKAVQG HRRFENFKKTIDPDRMNFVKLVDKLDEGNLSWKKFTSKVKKLHRDRNGAPYFREAGEVPKLEESFYANPLPGCLCEKGRKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	0	1
AT1G61100			disease resistance protein (TI...		Lus10018471 [exp]	1.4	0.8241
AT4G37590		MEL1, NPY5	NAKED PINS IN YUC MUTANTS 5, M...		Lus10011525 [exp]	4.0	0.7715
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	4.6	0.8081
AT3G06330			RING/U-box superfamily protein...		Lus10012791 [exp]	5.7	0.7894
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	7.9	0.8175
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	8.8	0.7960
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	10.0	0.8062
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	12.0	0.7997
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	12.4	0.7808
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	12.7	0.7705

Compare expression of checked genes

Lus10017171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.