Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45550 396 / 6e-142 MOB1-like MOB1-like, Mob1/phocein family protein (.1) AT4G19045 382 / 2e-136 Mob1/phocein family protein (.1) AT5G20440 258 / 4e-87 Mob1/phocein family protein (.1) AT5G20430 168 / 3e-53 Mob1/phocein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021556 [exp] 429 / 8e-155 AT5G45550 394 / 1e-141 MOB1-like, Mob1/phocein family protein (.1) Lus10007595 [exp] 372 / 2e-132 AT5G45550 394 / 1e-141 MOB1-like, Mob1/phocein family protein (.1) Lus10012150 [exp] 362 / 3e-128 AT5G45550 399 / 2e-143 MOB1-like, Mob1/phocein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142500 [exp] 416 / 7e-150 AT5G45550 399 / 2e-143 MOB1-like, Mob1/phocein family protein (.1) Potri.001G132700 [exp] 390 / 2e-139 AT4G19045 430 / 7e-156 Mob1/phocein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03637 [flax] [poplar] Mob1_phocein Mob1/phocein family
Representative CDS sequence Show only first row Show all	>Lus10017172 pacid=23167464 polypeptide=Lus10017172 locus=Lus10017172.g ID=Lus10017172.BGIv1.0 annot-version=v1.0 ATGACCACGGAAAGCAGAGCTTTGGAATTTGCCGACGCCTGTTGGGTGATGCAAACTGGTGACTCCGTCCCCGCTCCCAACCCTTCCTTCTTCCATCGTT GCGGTGGCTCTGGCGCCATTTGCCGAAACCAGAAAACGTTTCGTCCAAAGAAGAATGCTCCATCTGGCAGCAAGGGTGCTCAACTTCAAGCACATATTGA TGCTACTTTAGGTAGTGGTAACTTGAGGGAAGCTGTAAGACTTCCTCCTGGAGAAGATATCAATGAGTGGCTAGCAGTGAACACTGTTGACTTCTTCAAT CAAGTAAACATTTTGTATGGAACATTGACTGAATTCTGTACGCCATCCAACTGTCCAACAATGACAGCTGGCCCAAAATATGAATATCGATGGGCTGATG GAGTTACCATAAAGAAGCCAATTGAGGTATCTGCTCCAAAGTATGTTGAATATCTAATGGATTGGATTGAGGCTCAATTAGATGATGAGAAGATCTTCCC TCAAAGATTGGGGGCACCATTCCCACAAAATTTTCAAGATGTTGTGAAGACAATATTTAAGAGATTGTTCCGTGTATATGCCCACATATATCATTCACAT TTCCAGAAGATAGTGAGTTTGAAGGAAGAAGCACATCTAAACACTTGCTTTAAACATTTCGTTCTCTTTACATGGGAATTTCGGTTGATTGACAAGGGAG AACTCGCACCGCTCCATGACCTCGTTGAATCCATCCTTTGA
AA sequence Show only first row Show all	>Lus10017172 pacid=23167464 polypeptide=Lus10017172 locus=Lus10017172.g ID=Lus10017172.BGIv1.0 annot-version=v1.0 MTTESRALEFADACWVMQTGDSVPAPNPSFFHRCGGSGAICRNQKTFRPKKNAPSGSKGAQLQAHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFN QVNILYGTLTEFCTPSNCPTMTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIEAQLDDEKIFPQRLGAPFPQNFQDVVKTIFKRLFRVYAHIYHSH FQKIVSLKEEAHLNTCFKHFVLFTWEFRLIDKGELAPLHDLVESIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	0	1
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10001791 [exp]	3.2	0.8762
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	4.7	0.8942
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	7.9	0.8681
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	8.1	0.8910
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	8.5	0.8536
AT2G39170			unknown protein		Lus10028816 [exp]	8.7	0.8463
AT4G35410			Clathrin adaptor complex small...		Lus10003641 [exp]	10.0	0.8452
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	10.8	0.8855
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	11.0	0.8343
					Lus10017937 [exp]	11.4	0.8569

Compare expression of checked genes

Lus10017172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.