Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35560 399 / 3e-131 DENN (AEX-3) domain-containing protein (.1) AT2G20320 199 / 3e-55 DENN (AEX-3) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033443 [exp] 768 / 0 AT5G35560 856 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10000499 [exp] 204 / 3e-57 AT2G20320 918 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10022854 [exp] 200 / 4e-56 AT2G20320 852 / 0.0 DENN (AEX-3) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G143000 [exp] 476 / 2e-160 AT5G35560 879 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.002G255500 [exp] 211 / 6e-60 AT2G20320 906 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.018G065501 [exp] 48 / 8e-06 AT5G35560 0 / 1 DENN (AEX-3) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF03456 [flax] [poplar] uDENN uDENN domain
Representative CDS sequence Show only first row Show all	>Lus10017173 pacid=23167384 polypeptide=Lus10017173 locus=Lus10017173.g ID=Lus10017173.BGIv1.0 annot-version=v1.0 ATGTCTGAGAAGCAAGACGCTGGAAGCCCCAGCTGGAGTTCTTCGTTCCTTGCACAGACAACGGAAGATGTAGCAAAAGCTGTTGCTGCCGCTGCTGCTG CCACCACTGTTCGCTCTCCACGGCCCTCTGTGATTTTTTCGTCGAGTGAGGAAAACCCTGGAAGCCCACTTCAGAAGTTTCAGCGCCAAGTCTCCAAGGT GCTCAAAGGCTTTTCGCCTCCTCGCCGTGAAGTGAGAATTGGGAATTATAATCCCGAGGTTCTAACTAGCCAAAAGCGGCAATGGGCAAGTTTTCAGCTT CAGCACTTGGATCATAGGGCCTTAAAGGAGTCATCCAAACTTTTTGAAAGCATGGTCGTTGTTGGACTTTCACCAAACTGTGATGCTCAGTCACTTCAAA GACAATTCTGTGCAAGAAAGTCTGAAGGTTCTGGGAGATTGCAAACTACTATTGCTTCTCAAAATCAGTCTCATGTAGAACCTACTCTTGAGCCTCAGGT CTTATTTGTTTACCCTCCTGACAAGCTACTGCCTCTCAAGCACAAGGATCTCCTATCATTTTGCTTTCCTGCTGGCGTGGAGGTTAAAGCTGTGGAGAAA ACTGCTTCCATGAGTGAGTTGAATCAGCTCCTTCTTTCACAGGAGCATTTCAAGCAGAGCGACTTGTCATTTGTTTTCCGATTGCAGGTTGCTGATGATT CAACACTATACGGGTGCTGTGTTCTTGTGGAAGAAATCATTCAAAAACCATCTGGATTGCTATCTGTTGTTACAGATAAACAGCCTTCAGTCCCGACTTT GAGCCGTTACATGCTTACAACACGAAGATGTTATTGCATTCTTACACGTCTTCCTTTCTTTGAATTGCATTTTGGAGTGTTAAATAGTATTTTTACTGAA GAACGATTGGAAAGACTTACAAAAGGTATCGGTTTCCTGCACCTTGATTTCTCCATGGGATGCGGCAGGGAAAATAGTTCGCAAGACAATTTAGACAGTA CATCAGACGATCAAAAAGTAATAGGGGATTTGCCGCCCAAACCAGCAGAGTTGTCAAAGCCAGGATCAGATGGTGGAAGAGATGTTGGTCCAGTTGATAG TGAAAACCACTTGGGGGACCATGTTCCTGAGGGTAATCCTTTAATAACACAAAGTGACAAAGATAATGATGATACATTTCATTCTGGAACAGATGCCACT CTCAACTGTCAACCTGGTATCACAGACCATGAAGTTCGTATTAGTGAGACTGATGATCCATCAATAAAGTTAGTAGGAGAAAGGGGCTTGCCAAATCCGT CTCTTCCTTTGCTCCATCTATACCCATCCGAAAGCTCTGAATCTTCTCCAAGTTTCCAGGGATCTCCAAGCGAAGACCGGAATTTCCGCAGTGATGTTGA CGATACTGAGATGGAAGAGGCTTCTTTCTCTGGCCAAGAAGAGTCAAATGATCACCTTCGCATTCTAGAATGGGCAAAGGTTAGTGCCTGGTTTTCATGC AAGCACCACAACTGGCACTAG
AA sequence Show only first row Show all	>Lus10017173 pacid=23167384 polypeptide=Lus10017173 locus=Lus10017173.g ID=Lus10017173.BGIv1.0 annot-version=v1.0 MSEKQDAGSPSWSSSFLAQTTEDVAKAVAAAAAATTVRSPRPSVIFSSSEENPGSPLQKFQRQVSKVLKGFSPPRREVRIGNYNPEVLTSQKRQWASFQL QHLDHRALKESSKLFESMVVVGLSPNCDAQSLQRQFCARKSEGSGRLQTTIASQNQSHVEPTLEPQVLFVYPPDKLLPLKHKDLLSFCFPAGVEVKAVEK TASMSELNQLLLSQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEEIIQKPSGLLSVVTDKQPSVPTLSRYMLTTRRCYCILTRLPFFELHFGVLNSIFTE ERLERLTKGIGFLHLDFSMGCGRENSSQDNLDSTSDDQKVIGDLPPKPAELSKPGSDGGRDVGPVDSENHLGDHVPEGNPLITQSDKDNDDTFHSGTDAT LNCQPGITDHEVRISETDDPSIKLVGERGLPNPSLPLLHLYPSESSESSPSFQGSPSEDRNFRSDVDDTEMEEASFSGQEESNDHLRILEWAKVSAWFSC KHHNWH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	0	1
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	2.4	0.8593
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	2.4	0.8825
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	5.0	0.8537
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	5.5	0.8563
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	5.7	0.8098
AT1G11060			WAPL (Wings apart-like protein...		Lus10011196 [exp]	5.8	0.8084
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	6.2	0.7988
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	6.5	0.8409
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	6.9	0.8542
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	8.9	0.8269

Compare expression of checked genes

Lus10017173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.