Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20780 180 / 1e-57 CML42 calmodulin like 42 (.1) AT5G44460 166 / 4e-52 CML43 calmodulin like 43 (.1) AT1G05990 77 / 7e-18 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT3G59440 77 / 2e-17 Calcium-binding EF-hand family protein (.1) AT2G43290 77 / 3e-17 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT4G03290 75 / 3e-17 EF hand calcium-binding protein family (.1) AT3G07490 69 / 9e-15 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT4G12860 67 / 3e-14 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT4G14640 64 / 5e-13 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT1G24620 64 / 1e-12 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021134 [exp] 291 / 4e-101 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10003239 [exp] 197 / 3e-64 AT4G20780 249 / 5e-85 calmodulin like 42 (.1) Lus10035611 [exp] 194 / 4e-63 AT4G20780 242 / 3e-82 calmodulin like 42 (.1) Lus10027701 [exp] 78 / 1e-17 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10000972 [exp] 77 / 1e-17 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10006644 [exp] 74 / 5e-16 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009564 [exp] 71 / 2e-15 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10038088 [exp] 71 / 1e-14 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10028657 [exp] 68 / 4e-14 AT1G21550 122 / 9e-36 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142000 [exp] 187 / 2e-60 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.006G112500 [exp] 181 / 7e-58 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.017G029700 [exp] 76 / 6e-17 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G239100 [exp] 73 / 2e-16 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.005G183300 [exp] 73 / 3e-16 AT1G21550 136 / 1e-41 Calcium-binding EF-hand family protein (.1) Potri.006G065900 [exp] 73 / 1e-15 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 72 / 1e-15 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.018G127100 [exp] 72 / 2e-15 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G077300 [exp] 71 / 2e-15 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1) Potri.007G042900 [exp] 70 / 1e-14 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10017174 pacid=23165772 polypeptide=Lus10017174 locus=Lus10017174.g ID=Lus10017174.BGIv1.0 annot-version=v1.0 ATGGAGGATTCATCAGAACAAGTCGGAGCCGGAGTCGGTGGGAGGTTGAAGAAGAATTGCTCGCCGTCGTTCCGGCTAAGATCCCCAAGCCTAAACTCCC TCCGCCTCCGCCGCATCTTTGACCTCTTTGACAAGAACGGCGACAGGATGATAACGGTTCAGGACCTGAGCCAGGCCCTAAGCCTATTGGGCCTGGAAGC CGATATTTCTGAATTAGAATCCACGATCCAGGCCCACATAAAGCCCGACAACGTTGGGCTCGAGTTCGAGGACTTCGTCTCGCTCCACCACTCCCTCGGC GACGCGATGTTCGGCGGCGAGAGCCAGATGCAGTTCCAGGGGCAGGACGAGGACGAGTCGCTGAGCCAGGAGGAATCGGACCTGGCGGAGGCGTTCAAGG TGTTTGACGAAGATGGGGATGGTTACATCTCGGCGCGTGAGCTGCAGGTGGTGTTGCAGAAGCTGGGCTTGCCGGAGGCGACGGAGATGGAGAGGGTGGA GCAGATGATTCTGTCGGTTGACCAGAATAAAGATGGAAGGGTTGACTTTTCTGAGTTTAAGCATATGATGCGCTCTTCGCTGCTGCTACTCCCTAACCCG AATTCTACTTCTGCATAA
AA sequence Show only first row Show all	>Lus10017174 pacid=23165772 polypeptide=Lus10017174 locus=Lus10017174.g ID=Lus10017174.BGIv1.0 annot-version=v1.0 MEDSSEQVGAGVGGRLKKNCSPSFRLRSPSLNSLRLRRIFDLFDKNGDRMITVQDLSQALSLLGLEADISELESTIQAHIKPDNVGLEFEDFVSLHHSLG DAMFGGESQMQFQGQDEDESLSQEESDLAEAFKVFDEDGDGYISARELQVVLQKLGLPEATEMERVEQMILSVDQNKDGRVDFSEFKHMMRSSLLLLPNP NSTSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10017174 [exp]	0	1
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10022654 [exp]	10.1	0.5376
AT5G24090		ATCHIA	chitinase A (.1)		Lus10009215 [exp]	38.5	0.4593
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10034902 [exp]	47.6	0.4529
AT5G46090			Protein of unknown function (D...		Lus10033645 [exp]	60.6	0.4257
					Lus10013743 [exp]	68.4	0.4335
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10002190 [exp]	131.0	0.3663
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10015044 [exp]	191.3	0.3608

Compare expression of checked genes

Lus10017174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.