Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 252 / 2e-79 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 245 / 7e-77 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 220 / 5e-67 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 208 / 2e-62 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 206 / 3e-62 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G40460 176 / 2e-50 Major facilitator superfamily protein (.1) AT5G46040 159 / 5e-44 Major facilitator superfamily protein (.1) AT5G46050 146 / 2e-39 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT2G37900 143 / 3e-38 Major facilitator superfamily protein (.1) AT4G21680 142 / 4e-38 NRT1.8 NITRATE TRANSPORTER 1.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021132 [exp] 321 / 6e-106 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 241 / 8e-76 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 243 / 1e-74 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10035516 [exp] 226 / 2e-69 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 211 / 1e-63 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 208 / 2e-62 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 206 / 1e-61 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 205 / 3e-61 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 191 / 3e-56 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111900 [exp] 272 / 3e-87 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 244 / 3e-76 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 239 / 2e-74 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 236 / 2e-73 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 231 / 3e-71 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 221 / 1e-67 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 203 / 1e-60 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.019G055800 [exp] 175 / 3e-50 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.008G170100 [exp] 166 / 1e-46 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 166 / 2e-46 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10017176 pacid=23165781 polypeptide=Lus10017176 locus=Lus10017176.g ID=Lus10017176.BGIv1.0 annot-version=v1.0 ATGGAAATCAATTCGTGCATGGCCAGCGAAAATGACAATGCTTCTGCAATCGAACGGTGTGCCCAAAATACATTTAAAAATGGTCTCAAGAGATCCAAAA TTGCAGAACACAGAGTAAAAAGGGCAGAAGAAGACACATTGTTGTACACAAGAGATGGAACCACTGATTTCCATGGGAATCCTGCCGTCAAGAACAAAAC AGGAACCTGGAAAGCTTGCCCCTACATTCTTGGAAATGAATGCTGCGAGAGATTAGCGTACTATGGAATCAACACCAACCTTGTGAACTATCTCAAGTTC CAGATGAACCAGCGTAACATTGTGGCGGTCAACAACGTTACGAACTGGTCGGGAACGTGTTATGTTATGCCGTTACTCGGAGCTTTCCTCGCTGATGCAT ACTTGGGGAGATACTGGACTATTGCTACGTTCTCCATTATCTACGTCTTCGGGATGACTCTGTTAACAATGTCAGCATCTCTCCACACCCTGAAACCAAC CTGCAACACTTCCACAAACACATGCCATCCCACACCCTCCCAAACCTCAGTCTTCTTCCTCGGCCTCTACCTAATAGCATTAGGAACTGGAGGGATCAAG CCGTGCGTATCATCATTCGGGGCGGATCAATTCGACGATTCAGACGAAGAAGAGAAGAAAAAAAAGCTCGAGTTCTTCTACGAGCAGGCGCCGGATGCTA TGAGGAGTATGTGTTCGGCTCTGTCGCTGACGACTGCTGCGGTGGGGAGTTATCCGAGTAGCTTTTTGGTGAGTGTGGTGACGGATTTGAGTCGGAGAGG TGGTGGTGAGGGATGGATTCCTGATGATTTGAATTATGGGAGGCTTGATTGTTTCTTCTGGCTTCTTGCTGGGTTGAGTGTAGTGAATTTGGGGTTTTAT GTTTTGATTGCTAGGTGGTACACTTACAAGAAGCCTTCTGCTCAATCTGGGGACTGA
AA sequence Show only first row Show all	>Lus10017176 pacid=23165781 polypeptide=Lus10017176 locus=Lus10017176.g ID=Lus10017176.BGIv1.0 annot-version=v1.0 MEINSCMASENDNASAIERCAQNTFKNGLKRSKIAEHRVKRAEEDTLLYTRDGTTDFHGNPAVKNKTGTWKACPYILGNECCERLAYYGINTNLVNYLKF QMNQRNIVAVNNVTNWSGTCYVMPLLGAFLADAYLGRYWTIATFSIIYVFGMTLLTMSASLHTLKPTCNTSTNTCHPTPSQTSVFFLGLYLIALGTGGIK PCVSSFGADQFDDSDEEEKKKKLEFFYEQAPDAMRSMCSALSLTTAAVGSYPSSFLVSVVTDLSRRGGGEGWIPDDLNYGRLDCFFWLLAGLSVVNLGFY VLIARWYTYKKPSAQSGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	0	1
AT1G09600			Protein kinase superfamily pro...		Lus10028890 [exp]	1.0	0.9759
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10005516 [exp]	3.3	0.9388
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	4.2	0.9632
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	5.2	0.9632
					Lus10017294 [exp]	6.0	0.9632
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	6.7	0.9632
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10037110 [exp]	6.9	0.7520
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	7.3	0.9632
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	7.9	0.9632
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	8.5	0.9632

Compare expression of checked genes

Lus10017176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.