Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01180 102 / 4e-27 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 93 / 1e-23 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 92 / 4e-23 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 87 / 2e-21 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT4G21680 74 / 4e-17 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT1G18880 74 / 8e-17 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT2G26690 71 / 5e-16 Major facilitator superfamily protein (.1) AT1G68570 71 / 9e-16 Major facilitator superfamily protein (.1) AT3G47960 69 / 4e-15 Major facilitator superfamily protein (.1) AT5G62680 68 / 5e-15 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017176 [exp] 176 / 2e-56 AT3G54140 277 / 3e-89 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10021132 [exp] 145 / 1e-42 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 115 / 1e-31 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 102 / 6e-27 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10035516 [exp] 91 / 1e-22 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011055 [exp] 87 / 1e-21 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10015351 [exp] 85 / 8e-21 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10000670 [exp] 85 / 1e-20 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 84 / 2e-20 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111900 [exp] 122 / 5e-34 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 113 / 7e-31 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 112 / 1e-30 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 102 / 5e-27 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 102 / 6e-27 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 95 / 2e-24 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.012G071400 [exp] 84 / 2e-20 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.014G179400 [exp] 78 / 2e-18 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.011G120000 [exp] 76 / 1e-17 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.008G061100 [exp] 74 / 5e-17 AT3G53960 697 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017177 pacid=23165744 polypeptide=Lus10017177 locus=Lus10017177.g ID=Lus10017177.BGIv1.0 annot-version=v1.0 ATGAGGAGTATGTGTTCGGCTCTGTCGCTGACGACTGCTGCGGTGGGGAGTTATCCGAGTAGCTTTTTGGTGAGTGTGGTGACGGATTTGAGTCGGAGAG GTGGTGGTGAGGGATGGATTCCTGATGATTTGAATTATGGGAGGCTTGATTGTTTCTTCTGGCTTCTTGCTGGGTTGAGTGTAGTGAATTTGGGGTTTTA TGTTTTGATTGCTAGGTGGTACACTTACAAGAAGCCTTCTGCTCAATCTGGGGACTGA
AA sequence Show only first row Show all	>Lus10017177 pacid=23165744 polypeptide=Lus10017177 locus=Lus10017177.g ID=Lus10017177.BGIv1.0 annot-version=v1.0 MRSMCSALSLTTAAVGSYPSSFLVSVVTDLSRRGGGEGWIPDDLNYGRLDCFFWLLAGLSVVNLGFYVLIARWYTYKKPSAQSGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	0	1
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	2.0	1.0000
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	2.4	1.0000
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	3.0	1.0000
					Lus10017294 [exp]	4.0	1.0000
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	4.5	1.0000
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	5.2	0.9632
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	5.5	0.9572
					Lus10003941 [exp]	5.9	1.0000
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	6.0	1.0000
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	6.3	1.0000

Compare expression of checked genes

Lus10017177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.