Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36570 677 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 379 / 4e-122 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26730 341 / 1e-107 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 332 / 4e-104 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 329 / 2e-103 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 306 / 8e-95 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 298 / 9e-92 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 293 / 2e-89 RKL1 receptor-like kinase 1 (.1) AT5G53320 289 / 2e-88 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 287 / 2e-87 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021131 [exp] 937 / 0 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035138 [exp] 359 / 6e-114 AT1G68400 746 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10021673 [exp] 344 / 6e-109 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 344 / 7e-109 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 338 / 9e-107 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 333 / 8e-105 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034446 [exp] 329 / 3e-103 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10002299 [exp] 317 / 8e-103 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10033936 [exp] 318 / 1e-99 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G117200 [exp] 745 / 0 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 395 / 4e-128 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G062100 [exp] 345 / 6e-109 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 342 / 2e-108 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 340 / 2e-107 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 336 / 4e-106 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 335 / 2e-105 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 325 / 4e-102 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 320 / 6e-100 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 313 / 4e-97 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10017178 pacid=23165774 polypeptide=Lus10017178 locus=Lus10017178.g ID=Lus10017178.BGIv1.0 annot-version=v1.0 ATGGAGAAGCCACTTCCGCTCTCCTTCTCCATCTTCTTCTTCTTCCTCATCTCCAACTTCATCATCCCTTCACTCTCCGCTCTTCAACCCAACGACACGG AGGCTCTAACTCTCTTCCGCCTCCAAACAGACACCCACGGCAACCTCCGTTCAAACTGGACAGCTGGCACCCACCCCTGCTCTGCCTCCCCCTGGCTCGG CGTCAAATGCTCCCCCGTCGACGGCCGAGTCATCTCGCTCTCCCTTCCCTCCTTATCCCTCCGTGGCCCAATCGACTCCCTATCCTTCCTCGACCAGCTC CGCCTCCTCGATCTTCATGACAACCGCCTCAACGGCACACTTTCCCCACTCTCCAATTGCTCCAACCTCAAACTCCTCTACCTCGCCGGAAACGACTTCT CCGGTGAGATCCCGCTGCAGATCTCCTCTCTCCACCGCCTCCTCCGCTTGGATTTATCCGACAACAACATCCGTGGCCAGATTCCTCCCGGATTAGCCAA TTTGACCAAGTTGTTGACCCTCCGGTTGGAGAACAACGAGCTCTCCGGCCAAATTCCCGATCTCTCCACTTCGATGCCGAGTCTAAAGGAGCTGAATCTG TCGAATAATGAGCTCTATGGACGTGTACCGGATTATATCGGGAAGAAATTCGGGTACCGTAGCCTCACCGGAAACCAAGGGCTTTGCGGATTTACTCCGT TTCCGATTTGCTCGAAATTCATTCCAGGTCCGGGAGACGTTACCGTGCCTTCAAACCCTAGCTCAATAATGCCGCAATCTCCGATTGTAGAGAGTCGGAG CTCTGAGCCGCCTCACCGGCACAGAGGATTGAGCACCGGCGCGACGGTGGCAATCATAGTCGCAATTTGTGTTATCTTGCTGGTGGTGGCTTCGTTCACA ATAGCCTACTGCTGCGGCGGAGACAGAAGCGGAGGCGGAGGGAGCTCGAAAGTCGGGAGCGAGACTGGGAGCGCCGGAAAGAGGCGGAGGAGCGGGAGCA GTACTGTCGTCGGCGGCGGCGGTGGTGGTGGGGACAGCGACGGTACGAACGCGACGGACAGGAGCAAGCTGGTGTTCTACGACAGGAAGAATCAGTTCGA ATTGGAGGATTTGTTGAGAGCGTCGGCGGAGATGCTTGGGAAGGGTAGTTTGGGGACGGTATACAGGGCGGTGCTCGACGACGGATGTACGGTGGCGGTG AAGCGGCTGAAAGACGCGAATCCGTGCGCGAGGAAGGAGTTCGAGCAGTACATGGAAGTGATCGGGAAGCTGAAACATCCCAACATTGTGAGGTTCAAAG CTTACTACTACGCTAAAGAGGAGAAGTTGCTCGTCTACGACTATCTCCCCAATGGCAGCCTCCATTGGCTTCTCCATGGAAACAGGGGACCGGGGAGGAT TCCACTAGACTGGACGACTCGGATAAGTCTGGTACTCGGAGCAGCTCGCGGGTTAGCCAAGATCCACGACGAATACGGGTCAGCCCGAATCCCACATGGC AACGTCAAATCCTCCAACGTCCTCCTGGACAAAAACGGCGTCGCTTGCATAGCCGACTTCGGCCTGTCCTTACTCCTGAACCCGGTTCACGCGATCGCCA GAATGGGCGGCTACAGAGCTCCGGAGCAGGTGGAAACAAAGAGACTCTCCCAGAAAGCTGACGTGTACAGCTTCGGAGTCCTCCTTCTAGAAGTTCTCAC CGGCCAAGCTCCTTCCCAGTCTCATCGCCATCATCACCACCATAATCAGTACTCAATTTCGCCCTCACCGGAGGAGGAGGAGCAGCCGCCGCCATCGGCG GAGGCGGCGGAGGATCTTCCCAAGTGGGTGAGGTCGGTGGTGAAGGAAGAATGGACGGCGGAAGTGTTCGATCAGGAGCTTCTAAGGTACAAGAACATCG AGGAGGAGCTTGTGTCGATGCTACACGTGGCGTTGGCGTGCGTTGCTCCGGCGCCGGAGAAGAGGCCGGAAATGGGGGATGTGGTGAGGATGATTGAAGA GATTCGGGTGGAGCAGTCGCCGTTGGGTGAGGATTACGATGAGTCGCGTAATTCCATGTCACCGTCGCTTGCCACCACCGAAGATTGA
AA sequence Show only first row Show all	>Lus10017178 pacid=23165774 polypeptide=Lus10017178 locus=Lus10017178.g ID=Lus10017178.BGIv1.0 annot-version=v1.0 MEKPLPLSFSIFFFFLISNFIIPSLSALQPNDTEALTLFRLQTDTHGNLRSNWTAGTHPCSASPWLGVKCSPVDGRVISLSLPSLSLRGPIDSLSFLDQL RLLDLHDNRLNGTLSPLSNCSNLKLLYLAGNDFSGEIPLQISSLHRLLRLDLSDNNIRGQIPPGLANLTKLLTLRLENNELSGQIPDLSTSMPSLKELNL SNNELYGRVPDYIGKKFGYRSLTGNQGLCGFTPFPICSKFIPGPGDVTVPSNPSSIMPQSPIVESRSSEPPHRHRGLSTGATVAIIVAICVILLVVASFT IAYCCGGDRSGGGGSSKVGSETGSAGKRRRSGSSTVVGGGGGGGDSDGTNATDRSKLVFYDRKNQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAV KRLKDANPCARKEFEQYMEVIGKLKHPNIVRFKAYYYAKEEKLLVYDYLPNGSLHWLLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHDEYGSARIPHG NVKSSNVLLDKNGVACIADFGLSLLLNPVHAIARMGGYRAPEQVETKRLSQKADVYSFGVLLLEVLTGQAPSQSHRHHHHHNQYSISPSPEEEEQPPPSA EAAEDLPKWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLHVALACVAPAPEKRPEMGDVVRMIEEIRVEQSPLGEDYDESRNSMSPSLATTED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	0	1
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	1.7	0.9080
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	2.0	0.9285
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10002181 [exp]	2.8	0.9206
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	3.5	0.9015
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	3.5	0.8969
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	4.2	0.8835
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	4.9	0.8865
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	8.8	0.8803
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	9.5	0.8592
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	9.8	0.8360

Compare expression of checked genes

Lus10017178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.