Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09080 564 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 52 / 2e-06 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 49 / 9e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 48 / 3e-05 TAF5 TBP-associated factor 5 (.1) AT5G52820 48 / 3e-05 WD-40 repeat family protein / notchless protein, putative (.1) AT4G02730 48 / 3e-05 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 46 / 9e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49180 46 / 0.0002 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 46 / 0.0002 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT4G05410 46 / 0.0002 YAO YAOZHE, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021129 [exp] 166 / 2e-46 AT3G09080 45 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 54 / 9e-07 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10033802 [exp] 52 / 3e-06 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10006916 [exp] 50 / 6e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012475 [exp] 50 / 9e-06 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10014674 [exp] 49 / 1e-05 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 49 / 2e-05 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10003487 [exp] 48 / 3e-05 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 47 / 6e-05 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G096400 [exp] 1128 / 0 AT3G09080 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G026800 [exp] 61 / 5e-09 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G020200 [exp] 60 / 1e-08 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 56 / 2e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 52 / 1e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 50 / 4e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 50 / 7e-06 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.015G041200 [exp] 47 / 0.0001 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.019G087200 [exp] 46 / 0.0001 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.013G079600 [exp] 46 / 0.0002 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10017180 pacid=23165832 polypeptide=Lus10017180 locus=Lus10017180.g ID=Lus10017180.BGIv1.0 annot-version=v1.0 ATGAAGGCGAATCGCAGAGCCAAGAAGCCGGACGCCTCCTCGAAGCTGGTTCTTGAAGAGATAATCGGGCTGACTACAAAGAACGCCAATGGAATCGCGT CGACGGAATCCACTTCAGCGTGTGCTTATATCGCTGGATGTGCGGTGGTCCTCCACGACGTTGATTCCGGCCGACAGTCGCACCTCATCGCTTCTCATAG AATGCCTAAGCCATTGAGCTGCGTCGCAATGTCACGAGATGGACGATTGGTTGCCGCGGGAGAGTCAGGAAATCAACCTGCAGTACTAGTATGGGATCGA TCGACTCTGTCATTTTTATCTGATCTGAATGGCCATGTTTATGGAGTGGAGTGCATTGCTTTCTCGCCAGATGGGGAGCATCTTGTGTCTGTTGGAGGAT ACATATATCTTTGGGATTGGAAGAACGGCGTGTTGGTGGCCAAGCTTAAAGCAAGTTCATCTTGCTCGGCTATCACATCAGTCAGCTTCACATCGAATGG AAAATTTATGGTTACTGCTGGGAAGAAGCACTTGAAGTTTTGGACAGTTGGTTCGACATCGAAGAATACTCGATTAAACGCAGCTATAGGGGCACTGATA ATTCAAGGGAAGCCTGTTAATCTCGGCCCACATAAAGGAAGCTCGTTTGTGTGTGTCGCTAGTTCTGCAAACGTTGAACCAGTAGGGACTATGTTCCCTA TTTATGCTTTAACTGATGGAGGTCTCTTGTGTGTCATCGATAAGGGTTTGTCAGTAGCAAAGTCTGCGGACTTGAAGGTGGATAAAGGTCTTGCACTATC TGCCTCCCGTAAGCTTATTGCTTGTGGTTGTTCTAATGGAATTGTGAAGCTCTTTAGCAATGAGACTCTCAACTATACTGGAACTCTGCTGCATTCCAAG GCCAAAATTTGTGATGAGTCAATTGATAATCTTCGAAACACTGAAGACAGTGGAGAGAACCCGGTTCCTGCCTCTCCTGATTCTGTTGCTTGTCAGTTCT CTGCCTCAGAGAAGTTGGTGGTCGTTTATGCAGATCATACCCTCTGTATATGGGACGTTCTTGATGTGAACCAGGCCTCCAGGTGTTGCATGCTGGTTTC ACACTCAGCCTGTATTTGGGATGTAAAGAACCTGTGCTGTGAATACATGCACGATCCTTCTCTTGTGTGTGCTGCTAGAGGATGTGCTGGAGGAGTTTCT TTTGCTACCTGCTCAGCAGATGGCACTATTAGGTTGTGGGATCTTGCACCACAACAACAATTTGTTGGAGATGATTCTGATCACCATGGTTTGAATGCTG AACCATTAAGCCCTTCTTGCTTAGCAAGCACCGGAATTTTTGAGCGAGATACTCTGGATGTTGGTTTGAGCAGTCATGGCTTTCGTTGCATGGCAATTAG TTCAGATGCACAGTATCTAGCTGCTGGTGATAATGAGGGAAACCTTCACATCTACAATCTGCGCACTTTTGATTATACGTGTTTCCAGGATGTACACCAC TCAGAGATCCTATCATTGAGCTTCAGTGCATCACAAGAGGAACATGATGCCCCAGAAGTCGATCATGGCAATTACTTGCTTGTGTCAGGGGGAAGGGATC GAGTTATCCATCTTTATGATGTCAAAAGGAACTTTAATCTCATTGCAAGTGTTGACGAGCACTCAGCTGCAGTGACCTCTGTGAAGCTTGATAGAGTGGG TTGTAAGGCTATCAGTTGCAGCGCTGATAGATCACTGGTGTTCCGGGATGTTTTCGTGTCAGATAGTGGCTGTCAGATATTTCGGCGTCACCATCAAATG GCATCTCTTGGCACTGTATATGATATGGCTGTTGATAAGAAAATGGAGTTTGTTGTCACAGTTGGACAGGATAAGAAGATAAACACATTTGATGTTGCGT CCGGAAAGATGGTGAGATCTTTCAAGCAAGACAAGGATTTTGGAGACCCTATTAAGGTTATTATGGATCCAAGCTGCAGCTATCTACTTTGCTCTTACTC CAACAAGAGTATCTGCATGTATGACTCGATGAGCGGGGATCTGGTCATGCAGGCCATGGGACATGGTGAAGTTGTAACTGGTTTCGTCTTTTTACCCGAC TGCAAGCATATTGTATCTGTCTCTGGTGATGGTTGCATTTTCGTGTGGAAACTACCTCCTCGTATTACCTGCAGAATACTGCAGACAATAAAAGAAAACT TTGTTCCATTGTCTCCAGAAGAGTTGGGGCTACCGGCAACGTTTACTACACGAGTTGTGATTCCTGAAGAAGAAAGCCTGCAATTCAGAGTCAATCCTGA AGATGCACAAGAAAGGACCCCAACCTTCAGATTTAGCATTTCGCGACTTCCGAAGTGGGCGCAATCTAAACTTGCAGACTCTAGTAGTCCTCGGATGAAT CTTGATTGCTCGCCAAATAAGGACCAACAACATGTTGAATTGAAGATCGTTTCCCCTCTGACTCATAATGTTGAAGAATCTGAGCATATGTTCATTGAAG TCCAAACACCTTCCAGACTAGATGCATGTGGCAAAGAGTCCTCCTTTAATAGCTCAGATTCGGATTCTGCTCGAACAAGTGAACGTGAAAGAAAGTCAAT GACACGGAAGAATCTCAGTCGTTTTGCATTGGATAAACGTTGGCTCAGTGTTTATACCGTGTGTCACATCCTGAATTCCCCCGAAGTGCAGCGCTCAATT GATTTAAAGATGCCAGTCCCATCAAGTTCTAGTAATTGTGATATTTTGTCTGAAGATAACTGTCGGTTTTCTGGTGAAATAACAAATGCAAGTGATCAGC CGAATGGTAGCCAGATATCTGAGCAGTGTTCGTTCAATTTGGAGACCCAAACTCAAGAGGGCATAGCAACTGAAGAGAGTGAACTTTTCAAGCAGCACTT TGGTAGTTTATCAACAGCGAGCAAGATAGAAGGCTGTAAATCATCAGTAAGAAGAAGTTACTCTGCAAGATATGTTGTGCGGCGGGAGTATCCTGGCGTT CCCCAGAAACTCTTCACCACACCCACCCGTGATTCTGGTCGTAAACCATCAGATGCAAAGGTTACTGGAGAATCATCCGTTCCTATCGACATGGAGAAAC CAGCAATACAGTATCTGGGAGAAGGTCAACATATAATTTCTTCCATGCAGGTCCTATCACACACCTCTCAAAAAGATTTAACAAAATGCATCACAGAGGA AGAGCCTTACGAAGGAGAACAAGACCGAAAGGAACATACTTTGGAGGAAAATGACCTGCAGTCTACTGAGGAAATAGTATCACTGTGTAGAGAAGCATTA TTGAAACTGAATGCTGCAGCTGACAACGCATCTCTTATGTTCTCACAATTAGAAAGCGTGGTCTCGAGGCAAGAAACTTCAAATAGACCCGGAGCTAAGT TTTATGAAAGGGCAAGCGACCTGCTCTCTTCGATCACAGAGAAAATTAATGCAGTTGCAAAACTGGCGCAGCGTGGCAATGGTGGAAGCACAAGTAAAAT GGAAGTTCATTGCTGA
AA sequence Show only first row Show all	>Lus10017180 pacid=23165832 polypeptide=Lus10017180 locus=Lus10017180.g ID=Lus10017180.BGIv1.0 annot-version=v1.0 MKANRRAKKPDASSKLVLEEIIGLTTKNANGIASTESTSACAYIAGCAVVLHDVDSGRQSHLIASHRMPKPLSCVAMSRDGRLVAAGESGNQPAVLVWDR STLSFLSDLNGHVYGVECIAFSPDGEHLVSVGGYIYLWDWKNGVLVAKLKASSSCSAITSVSFTSNGKFMVTAGKKHLKFWTVGSTSKNTRLNAAIGALI IQGKPVNLGPHKGSSFVCVASSANVEPVGTMFPIYALTDGGLLCVIDKGLSVAKSADLKVDKGLALSASRKLIACGCSNGIVKLFSNETLNYTGTLLHSK AKICDESIDNLRNTEDSGENPVPASPDSVACQFSASEKLVVVYADHTLCIWDVLDVNQASRCCMLVSHSACIWDVKNLCCEYMHDPSLVCAARGCAGGVS FATCSADGTIRLWDLAPQQQFVGDDSDHHGLNAEPLSPSCLASTGIFERDTLDVGLSSHGFRCMAISSDAQYLAAGDNEGNLHIYNLRTFDYTCFQDVHH SEILSLSFSASQEEHDAPEVDHGNYLLVSGGRDRVIHLYDVKRNFNLIASVDEHSAAVTSVKLDRVGCKAISCSADRSLVFRDVFVSDSGCQIFRRHHQM ASLGTVYDMAVDKKMEFVVTVGQDKKINTFDVASGKMVRSFKQDKDFGDPIKVIMDPSCSYLLCSYSNKSICMYDSMSGDLVMQAMGHGEVVTGFVFLPD CKHIVSVSGDGCIFVWKLPPRITCRILQTIKENFVPLSPEELGLPATFTTRVVIPEEESLQFRVNPEDAQERTPTFRFSISRLPKWAQSKLADSSSPRMN LDCSPNKDQQHVELKIVSPLTHNVEESEHMFIEVQTPSRLDACGKESSFNSSDSDSARTSERERKSMTRKNLSRFALDKRWLSVYTVCHILNSPEVQRSI DLKMPVPSSSSNCDILSEDNCRFSGEITNASDQPNGSQISEQCSFNLETQTQEGIATEESELFKQHFGSLSTASKIEGCKSSVRRSYSARYVVRREYPGV PQKLFTTPTRDSGRKPSDAKVTGESSVPIDMEKPAIQYLGEGQHIISSMQVLSHTSQKDLTKCITEEEPYEGEQDRKEHTLEENDLQSTEEIVSLCREAL LKLNAAADNASLMFSQLESVVSRQETSNRPGAKFYERASDLLSSITEKINAVAKLAQRGNGGSTSKMEVHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	0	1
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	5.6	0.9186
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	6.3	0.9022
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	8.5	0.8898
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	8.6	0.9153
AT4G14180		ATPRD1	putative recombination initiat...		Lus10021481 [exp]	12.9	0.8131
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	15.2	0.8910
					Lus10017515 [exp]	15.7	0.8798
AT1G07970			unknown protein		Lus10023345 [exp]	16.7	0.8988
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	17.5	0.8820
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	19.7	0.9047

Compare expression of checked genes

Lus10017180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.