Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007197 [exp] 183 / 4e-61 ND / Lus10012087 [exp] 185 / 1e-59 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10032804 [exp] 176 / 5e-57 ND / Lus10003272 [exp] 171 / 5e-55 ND 39 / 0.002 Lus10008255 [exp] 167 / 2e-50 AT1G48120 49 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10000686 [exp] 157 / 1e-49 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1) Lus10033138 [exp] 127 / 2e-39 ND 38 / 2e-04 Lus10034059 [exp] 127 / 9e-39 AT1G48120 43 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10040026 [exp] 126 / 2e-38 AT1G48120 45 / 3e-06 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10017181 pacid=23165785 polypeptide=Lus10017181 locus=Lus10017181.g ID=Lus10017181.BGIv1.0 annot-version=v1.0 ATGGATTCCCGTGATGTTTGTTGGCTTCCCTTTGGGCCACATCCGGACCTTGAGGTCCCGGCCTCGACTTTCCGGTGTCTCATCCGTTGCGCCGACGTAG GTGAGTACTACGATTCCTGTCGTGTGCTCCGACAGTTTGGGTACACACAGGTGGTCCCTCCCTCGATTCCTGTGCCGCTACGGGCCATTAGGCCCAAATC TATCCGGACCTATGCGGTCCAGTGGGCCCCGGCTGAGGATAGGACTTGGTCGGAGCAGGACTTCATCAGATTTCACCGGCTTCACCTTATGTTCGTAGAT TTCACCGCCTACACCTTATGTTCGAGAGGGCAGTGTTTGGTGCAGATGTTGGTCCAGGGTACATGGACTGGTACCTCGAGCACAGTCACCCACGCATCAT GGCGCCGGCTAACCCCGGTGTGGGAGTCCCAGCTTTAG
AA sequence Show only first row Show all	>Lus10017181 pacid=23165785 polypeptide=Lus10017181 locus=Lus10017181.g ID=Lus10017181.BGIv1.0 annot-version=v1.0 MDSRDVCWLPFGPHPDLEVPASTFRCLIRCADVGEYYDSCRVLRQFGYTQVVPPSIPVPLRAIRPKSIRTYAVQWAPAEDRTWSEQDFIRFHRLHLMFVD FTAYTLCSRGQCLVQMLVQGTWTGTSSTVTHASWRRLTPVWESQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017181 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10009928 [exp]	3.9	0.7266
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10027357 [exp]	4.2	0.7396
					Lus10011637 [exp]	10.4	0.7366
					Lus10042500 [exp]	12.5	0.6493
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	13.1	0.6926
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10027305 [exp]	14.1	0.6604
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	19.5	0.6725
AT5G18020			SAUR-like auxin-responsive pro...		Lus10027690 [exp]	20.4	0.6570
					Lus10011276 [exp]	21.3	0.6673
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	21.4	0.6725

Compare expression of checked genes

Lus10017181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.