Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38050 138 / 2e-40 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT1G72590 71 / 1e-14 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 69 / 6e-14 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G16530 67 / 3e-13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) AT3G43840 45 / 9e-07 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT3G55360 47 / 2e-06 ECR, CER10, ATTSC13, TSC13 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021127 [exp] 172 / 2e-54 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10008951 [exp] 76 / 2e-16 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028869 [exp] 69 / 9e-15 AT5G16010 123 / 2e-35 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10042055 [exp] 66 / 9e-13 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10028371 [exp] 60 / 1e-10 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10005162 [exp] 53 / 3e-08 AT3G55360 541 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10001695 [exp] 51 / 1e-07 AT3G55360 540 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10018059 [exp] 42 / 0.0001 AT1G72590 190 / 4e-60 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110600 [exp] 152 / 5e-46 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 149 / 1e-44 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 142 / 3e-42 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 75 / 3e-16 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245200 [exp] 75 / 4e-16 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012700 [exp] 72 / 3e-15 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 69 / 3e-14 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 69 / 4e-14 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 69 / 6e-14 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.009G125200 [exp] 67 / 3e-13 AT2G16530 386 / 7e-134 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10017183 pacid=23165805 polypeptide=Lus10017183 locus=Lus10017183.g ID=Lus10017183.BGIv1.0 annot-version=v1.0 ATGTCTTTCCTCTTCTCAGATCAGTTCTTCCACAATTGCCTCATCGCGTTCTACCTGATCGGACCTCCGACCTACATCTCCCTCCAATTCCTCTCCGCGC CTTACGGCAAGCACAGCCGCCCCGGATGGGGCCCCACCATCCCAGCTCCTCTAGCATGGTTCTTAATGGAATCCCCTTCCATTTGGCTCCCGATCTTACT CTTCCCCTACGGCCGCAACGCCGCCACTCAGAAAGCGCTAATTCTCATTCGGATTCAACCTGCTGAACAGCTACCTCCAGAGTCGATGGGTGTCGCACTA CAAGACGGATTACGAGAGCGACGGGGTCCGGTTCTGGGTGAAAAGGAAGGTGGCGGGTATAAGGTGCCCAGAGGCGGGTGGTTCGATCTGGTTAGCTGCC CGAATTATTTAGGGGAGATCATGGAGTGGGCCGGTTGGACCGTGATGAGCTGGTCGTGGGTCGGGTTGGGTTTCTTGCTGTACACGTGTGCGAACTTGGT GCCGAGGGCGCGTGCTAATCATAAGTGGTATTTGGAGAAGTTTGGGGAGGATTATCCCAAGAGTAGGAGAGCTGTATTCCCTTACTTGTATTGA
AA sequence Show only first row Show all	>Lus10017183 pacid=23165805 polypeptide=Lus10017183 locus=Lus10017183.g ID=Lus10017183.BGIv1.0 annot-version=v1.0 MSFLFSDQFFHNCLIAFYLIGPPTYISLQFLSAPYGKHSRPGWGPTIPAPLAWFLMESPSIWLPILLFPYGRNAATQKALILIRIQPAEQLPPESMGVAL QDGLRERRGPVLGEKEGGGYKVPRGGWFDLVSCPNYLGEIMEWAGWTVMSWSWVGLGFLLYTCANLVPRARANHKWYLEKFGEDYPKSRRAVFPYLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10017183 [exp]	0	1
AT1G44960			SNARE associated Golgi protein...		Lus10006050 [exp]	3.5	0.8708
AT5G39570			unknown protein		Lus10016220 [exp]	7.7	0.8759
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	8.5	0.8710
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	11.0	0.8665
AT4G09890			Protein of unknown function (D...		Lus10028734 [exp]	20.6	0.8654
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	22.2	0.8570
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	23.1	0.8534
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	23.7	0.8637
					Lus10042011 [exp]	24.2	0.8578
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	26.8	0.8640

Compare expression of checked genes

Lus10017183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.