Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38040 620 / 0 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021126 [exp] 1162 / 0 AT2G38040 765 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095800 [exp] 664 / 0 AT2G38040 870 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Potri.016G110500 [exp] 654 / 0 AT2G38040 890 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Potri.014G081000 [exp] 516 / 1e-174 AT2G38040 699 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF03255 [flax] [poplar] ACCA Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10017184 pacid=23165760 polypeptide=Lus10017184 locus=Lus10017184.g ID=Lus10017184.BGIv1.0 annot-version=v1.0 ATGGCTTCCATACCGTATTCTCCAGCTGCGGTCACGGCGTCGGATCTTCTCCGGAGCTCAAGTGGTGGGTTATCAAGTATCCCTCTGAGGACCCTAGGGG GATCGCAGTTTGGAGGTTCGACTTCCAGAGCTAGACATTTCTCCATCGTTGCTGCCAAGGGTCGGAGGATTAAGAAGCAGCGTGAGTATCCGTGGCCTCG TGGTGATCCGGATCCTAATGTGAAGGGAGGACTCCTTGCTCATCTCTCGCCTTTCAAGCCTCTCACAGTGAAGCCTAAACCTGTCGTTCTGGAATTCGAG AAGCCGCTTATTGATCTCGAAAAGCAGATCAAGGATGTGAAGGAGATGGCAGGTGACACTGGTTTGGACTTCACCGATCAAATTGAACTGTTGGAGAATA AATATGAAGAGGCTCGGAAGAAGTTGTACATGAGTTTGACTCCGATACAAAGGGTGCATATTGCACGACATCCTCACAGGCCGACTTTCCTTGATCATAT CTTTAACATTACAGACACGTTTATAGAGCTTCACGGAGATCGAGCTGGTTATGATGATCCTGCTATTGTAACTGGGATAGGTAGCATTGATGGTCAAAGA TACATGTTCATTGGCCACCAAAAGGGTAGAAACACCAAAGAAAGTATTAAGCGCAACTTTGGAATGCCCACTCCTCATGGATACAGGAAGGCTCTTCGAA TGATGCACTATGCTGATCACCACGGCTTCCCTATTGTGACGTTTGTTGATACACCCGGAGCATTTGCAGACCTTAGGTCTGAGGAGCTCGGCCAAGGTGA AGCTATTGCGCAAAACTTGAGGACCATGTTTGGTCTGAAAGTACCGATTGTTTCAATTATTATTGGCGAGGGTGGCTCTGGTGGTGCCCTGGCCATAGCT TGTGCTAATTATTTGTTGATGCTTGAAAATTCAGTTTTCTATGTTGCCAGTCCAGAAGCATGTGCCGCAATTTTGTGGAAGAGTGCCAAAGCTGCCCCAA AGGCAGCACAGAAGTTAAAGATTACTGCTAAAGAATTGTGCAAGCTGCAAATTTGTGATGGGATAATTCCTGAGCCACTTGGGGGTGCACATGCAGATCC AGAATACACCTCGCAACAGCTAAAGGGTGCAATCAAGAAGGCTATGAATGAGCTCTCCAAGATGGATACAGAAAAATTATTAAAGCACCGCAGTCATAAG TTCCGGAAAATTGGTAAAATCGCCCCAAATGCGCCACTGCCCGAGAGGAAGAAGAAAGCCAAAAGGGCTTCGAAGGCCCGATTTGCTCAACTAGGGGATG AGGTCGAACAGTTGAAACAGAAAATTTCCAAAGGGGGGAAATCTGCGATGCCCAGGTTAATTCCGGCCATTCCTGAGCAGACAGTATCGGTAGAAAAATT TTCCGTGAATGAGATGATAAAAAAACTGAGACGGGAGGTCGATCGTGAATTATCGGTAGCTCTTAAGGCAGTTGGCGTCGAGGACAAGATGTCGTTGCTG AGGGATGAAATCAGGAAAGCGCACTCGCAAGGACAGCTCAACGATCCAAAGGTAACTGGCGAGATCGAAAAGCTTAAAAACGAACTCAGCCAGAGCCTCT CGGCTGCACCGAATCATGTCAAGCTCAAGACTAAGCTTGACAAGCTGGACGAGTTGGCTAAAGTCCAGAGCATGTCCGAGGAGAGGAAGAAGAATGCACA GATGGTCAAGGAGCAAATGAACGAGAAGCTGAAAGAGATCATGGACCAACCCGAGAAAAAGGAGAAGGTGGAGAAATTGAAAGCCGAAATTGAAAAGGTG CGTGCTTCCGGCATTGAAAATGCTGACCAGAAGACGAAAGATAGGATTGCCGAGATGAAGCTGGATCTAGATAAAGAGCTGGCAAAAGACCTCAAGTCGC TCGGGTTCAATCTAAAGGTTGTGAAGAAACCGAGTTCGGAAACCACAGTGAACGAAGTTCATGTTCCAGATGTGTATGAAAAGTTGAAATCCCTGGAGGA AGCAACGAAGAAGAAGATCGAGAATGCAGTCCAGTCGCCGGAGATAAAGAAACTGATCCGGATGCTGAAATGGGCTGTAGAAAAGGAAGGAAGCTAA
AA sequence Show only first row Show all	>Lus10017184 pacid=23165760 polypeptide=Lus10017184 locus=Lus10017184.g ID=Lus10017184.BGIv1.0 annot-version=v1.0 MASIPYSPAAVTASDLLRSSSGGLSSIPLRTLGGSQFGGSTSRARHFSIVAAKGRRIKKQREYPWPRGDPDPNVKGGLLAHLSPFKPLTVKPKPVVLEFE KPLIDLEKQIKDVKEMAGDTGLDFTDQIELLENKYEEARKKLYMSLTPIQRVHIARHPHRPTFLDHIFNITDTFIELHGDRAGYDDPAIVTGIGSIDGQR YMFIGHQKGRNTKESIKRNFGMPTPHGYRKALRMMHYADHHGFPIVTFVDTPGAFADLRSEELGQGEAIAQNLRTMFGLKVPIVSIIIGEGGSGGALAIA CANYLLMLENSVFYVASPEACAAILWKSAKAAPKAAQKLKITAKELCKLQICDGIIPEPLGGAHADPEYTSQQLKGAIKKAMNELSKMDTEKLLKHRSHK FRKIGKIAPNAPLPERKKKAKRASKARFAQLGDEVEQLKQKISKGGKSAMPRLIPAIPEQTVSVEKFSVNEMIKKLRREVDRELSVALKAVGVEDKMSLL RDEIRKAHSQGQLNDPKVTGEIEKLKNELSQSLSAAPNHVKLKTKLDKLDELAKVQSMSEERKKNAQMVKEQMNEKLKEIMDQPEKKEKVEKLKAEIEKV RASGIENADQKTKDRIAEMKLDLDKELAKDLKSLGFNLKVVKKPSSETTVNEVHVPDVYEKLKSLEEATKKKIENAVQSPEIKKLIRMLKWAVEKEGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10017184 [exp]	0	1
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10023270 [exp]	2.6	0.8586
AT5G11560			catalytics (.1)		Lus10011690 [exp]	3.3	0.8959
AT1G74160			unknown protein		Lus10034677 [exp]	4.9	0.8444
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10043204 [exp]	5.0	0.8662
AT5G11560			catalytics (.1)		Lus10022143 [exp]	14.7	0.8878
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	14.9	0.8746
AT2G03640			Nuclear transport factor 2 (NT...		Lus10026668 [exp]	20.3	0.7634
AT1G50710			unknown protein		Lus10032639 [exp]	20.9	0.8274
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	23.2	0.8014
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	23.6	0.8170

Compare expression of checked genes

Lus10017184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.