Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01160 310 / 8e-103 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021125 [exp] 650 / 0 AT5G01160 295 / 1e-95 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095600 [exp] 457 / 1e-158 AT5G01160 335 / 5e-112 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017185 pacid=23165829 polypeptide=Lus10017185 locus=Lus10017185.g ID=Lus10017185.BGIv1.0 annot-version=v1.0 ATGCTACGAATCCAGCTTAAGAAGCAGGCTTCTGATATTGGAGGAGCGCAGATAAAGCCTCTTCCAGTGGAGACAGTCACCGTGGCTTGCCCTGACCACC TTGTCCTTGCTGATCTTCCTGTAGCCAAGGGCATTGGAGCTTCCACCGCCGCTACCGTAGTTAAGAACATCGGTAGAAGGTCCCGACGCCAGCTGGGAGA GCGAGTCCACTTCTGCGTTCGGTGTGATTTCCCGATCGCTATCTATGGACGCCTGAGCCCCTGCGAGCATGCCTTCTGTCTAGATTGTGCTAGGAGTGAT TCAATCTGTTACTTATGTGATGATCGTATCCAGAAGATCCAGACGATAAAAATCATGGAGGGACTTTTTATCTGTGCAGCCCCTCACTGTCTCAAGTCAT TCTTGAAGCGGACTGATTTCGAATCTCACATTCACCAGAGCCACGCAGACCTTCTACAGCCTAACGCAGAAAACGACAACGACAATGAATCAGAAGTCCA AAGTGCTAAACAACCTGCACCGTCCGAGTCAACTGCTCGAGCACTCCCAAGGTCCGGTTCGAATTCCCAGTTTCTCGACAACGAAGAAAAAGCTCGCAGG CAGCAGCAACTACCGCTTCAAAGGCCAATGATGCCTAAGCCACCGTTTTATGGACAGCCCCAAAATTACATGTCGGATCCACAGATCGACACCAATCGTC CTCCTGGGTTCGATCGGCCGGCTTTTCAGAACCGTTTCCAGCCGGGTGGTCCCGTGCAAGAATCCAGTCAGCAGGGAATGCCGTCCGAGTCTGGAATGGC TGAATACCCTGCAATGCAAGCTATGCAACAACAACAACAGCCGAACTTTCTCGTTCCGATGAATGCTACCCCGATGATGCCTCCCCAATTCGCACAACCA TTCTACGGTGTGCATTTCGAGGCGGGTCAGATGGACCGGCAGGATACGGCGCCAGCAGAAGCTGGACCAGAACAAAGCTCCTTGCTGGGTTTCCCACCTG GTGGTATGAACTTCATGGCAAATTATCCCCAGTGGAACGTGGTGCCGCCACAGGTAAGTCAGGGAATGGGAGAAGGATTCACAAACCCGGATCCGAGGGA CGGGAAGGGAATATTGGCGGCTCCACAGCAGCAGCAGTCGTTTCTTCACCCTCCTCCGCCACCTCCGATTCCTCACCCCTCTACTCAGTCGAACCGAGGG AAGTATTATTCGGGTGAAGGGAGCCATGACGGGCAAGGTTTTGGGTGGCAGCAGCAAGAGAATCGTGACAGCTTCGGCAGCGGCCAGGACTAG
AA sequence Show only first row Show all	>Lus10017185 pacid=23165829 polypeptide=Lus10017185 locus=Lus10017185.g ID=Lus10017185.BGIv1.0 annot-version=v1.0 MLRIQLKKQASDIGGAQIKPLPVETVTVACPDHLVLADLPVAKGIGASTAATVVKNIGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSD SICYLCDDRIQKIQTIKIMEGLFICAAPHCLKSFLKRTDFESHIHQSHADLLQPNAENDNDNESEVQSAKQPAPSESTARALPRSGSNSQFLDNEEKARR QQQLPLQRPMMPKPPFYGQPQNYMSDPQIDTNRPPGFDRPAFQNRFQPGGPVQESSQQGMPSESGMAEYPAMQAMQQQQQPNFLVPMNATPMMPPQFAQP FYGVHFEAGQMDRQDTAPAEAGPEQSSLLGFPPGGMNFMANYPQWNVVPPQVSQGMGEGFTNPDPRDGKGILAAPQQQQSFLHPPPPPPIPHPSTQSNRG KYYSGEGSHDGQGFGWQQQENRDSFGSGQD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	0	1
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	1.0	0.7972
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	3.2	0.7389
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	4.7	0.7741
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	4.9	0.7517
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	5.3	0.7509
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	8.1	0.7487
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	13.4	0.7240
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	13.4	0.7147
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	19.0	0.7469
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	21.1	0.7490

Compare expression of checked genes

Lus10017185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.