Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01230 590 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G25730 132 / 2e-34 FtsJ-like methyltransferase family protein (.1) AT5G13830 67 / 5e-13 FtsJ-like methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021124 [exp] 577 / 0 AT5G01230 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10040439 [exp] 132 / 3e-34 AT4G25730 938 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10023555 [exp] 132 / 4e-34 AT4G25730 941 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10040283 [exp] 64 / 9e-12 AT5G13830 340 / 5e-120 FtsJ-like methyltransferase family protein (.1) Lus10023402 [exp] 52 / 2e-07 AT5G13830 312 / 1e-108 FtsJ-like methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056300 [exp] 578 / 0 AT5G01230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G118400 [exp] 134 / 5e-35 AT4G25730 840 / 0.0 FtsJ-like methyltransferase family protein (.1) Potri.010G202200 [exp] 65 / 5e-12 AT5G13830 310 / 6e-108 FtsJ-like methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01728 [flax] [poplar] FtsJ FtsJ-like methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017186 pacid=23165858 polypeptide=Lus10017186 locus=Lus10017186.g ID=Lus10017186.BGIv1.0 annot-version=v1.0 ATGGGGAAAGCTTCCAGGGATAAGCGGGACATTTACTATAGAAAAGCTAAAGAAGAAGGCTGGCGAGCTCGGAGTGCCTTCAAGCTCCTTCAGATTGACG AGGAATTCAACATATTCGAAGGGGTGAAGCGTGTGGTGGATCTATGCGCCGCACCTGGTAGCTGGAGTCAGGTTCTGAGTCGTCAACTTTATCTTCCTGC AAAGCTCTCACAAGATTCCAACGATAAGGAGGATCTTCCTCTTATTGTGGCTATTGACCTTCAACCAATGGCTCCAATCGAAGGTGTGATTCAAGTTCAG GGTGATATTACCAATGCTCGGACAGCCGAAGTTGTCATTCGGCACTTCGATGGTTGCAAAGCTGACCTAGTTGTTTGTGATGGCGCCCCTGACGTTACTG GTCTACATGACATGGATGAGTTTGTTCAATCCCAACTCATACTAGCGGGTTTGACGATCGTCACACACATACTTAGAGAAGGTGGTAAATTTATTGCGAA AATTTTTCGTGGGAAAGATACAAGTCTTCTCTACTGCCAGCTGAAATTGTTTTTTCCTCTGGTCACCTTTGCCAAACCGAAGAGCAGCCGCAATTCCAGC ATAGAGGCATTTGCAGTGTGCGAGAATTATTCTCCACCGGAAGGTTTTAACCCGCGAGACTTGCATCGCCTCCTCGAAAAGATCGGGAGCCCCTCCGGTG CTGATGATCTAGATTGTACCAGCGGATGGCTAGAAGGTCCGAACAAGGTATACATCCCGTTTCTAGCCTGTGGGGACCTGAGCGGCTACGACTCCGATCG ATCCTACCCGCTTCCCAAAAACCCAGAAGGCGATAGTTACAAGAGCTTGGATCCAGTTCAACCCCCGATCGCCCCTCCTTACAAGAGAGCACTCGAGATG AAGAAAGCCTCCAATCTGTCTGGGAACTCAACCAGAGCCTTGTAA
AA sequence Show only first row Show all	>Lus10017186 pacid=23165858 polypeptide=Lus10017186 locus=Lus10017186.g ID=Lus10017186.BGIv1.0 annot-version=v1.0 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLYLPAKLSQDSNDKEDLPLIVAIDLQPMAPIEGVIQVQ GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILREGGKFIAKIFRGKDTSLLYCQLKLFFPLVTFAKPKSSRNSS IEAFAVCENYSPPEGFNPRDLHRLLEKIGSPSGADDLDCTSGWLEGPNKVYIPFLACGDLSGYDSDRSYPLPKNPEGDSYKSLDPVQPPIAPPYKRALEM KKASNLSGNSTRAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10017186 [exp]	0	1
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	1.4	0.9407
AT1G03910			unknown protein		Lus10035558 [exp]	2.8	0.9348
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	4.4	0.9447
AT1G28120			unknown protein		Lus10026630 [exp]	9.8	0.9383
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10037680 [exp]	10.2	0.9233
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	11.2	0.9309
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	12.0	0.9326
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	12.1	0.9060
AT1G12050			fumarylacetoacetase, putative ...		Lus10010485 [exp]	13.2	0.9136
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	13.8	0.9330

Compare expression of checked genes

Lus10017186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.