Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54110 450 / 7e-161 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G58970 392 / 4e-138 ATUCP2 uncoupling protein 2 (.1.2) AT4G24570 182 / 1e-55 DIC2 dicarboxylate carrier 2 (.1) AT1G14140 172 / 1e-51 Mitochondrial substrate carrier family protein (.1) AT2G22500 167 / 9e-50 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT5G09470 159 / 3e-46 DIC3 dicarboxylate carrier 3 (.1) AT4G03115 149 / 1e-42 Mitochondrial substrate carrier family protein (.1) AT5G19760 126 / 3e-34 Mitochondrial substrate carrier family protein (.1) AT5G01340 92 / 2e-21 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT5G61810 91 / 7e-21 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021123 [exp] 532 / 0 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10027755 [exp] 497 / 2e-179 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 494 / 4e-178 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 386 / 2e-135 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10016445 [exp] 369 / 2e-128 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10030443 [exp] 172 / 1e-51 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 145 / 5e-41 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 140 / 2e-38 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 136 / 3e-38 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095500 [exp] 489 / 1e-176 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G110100 [exp] 476 / 3e-171 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.001G247800 [exp] 401 / 1e-141 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.017G045100 [exp] 192 / 1e-59 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045150 [exp] 192 / 2e-59 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 188 / 8e-58 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.007G113000 [exp] 181 / 4e-55 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.002G104400 [exp] 169 / 2e-50 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045332 [exp] 166 / 7e-49 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.005G157300 [exp] 164 / 2e-48 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10017187 pacid=23165769 polypeptide=Lus10017187 locus=Lus10017187.g ID=Lus10017187.BGIv1.0 annot-version=v1.0 ATGGTAGCAGACGGCAAGGCTAAATCTGACATCTCCTTGGCCGGCACTTTCGCCAGTAGTGCCTTCGCTGCTTGCTTCGCCGAGATTTGTACAATCCCCT TGGACACGGCTAAAGTCAGGCTTCAGCTTCAAAAATCAGCTGTTAGTGGAGATGTATTGACGGCCCCCAAATACAATGGTATGTTGGGCACTGTTGCTAC CATTGCCAGGGAAGAAGGAGCAGCATCGCTTTGGAAAGGGATTATACCTGGACTCCACCGGCAATGCCTGTTTGGTGGCTTAAGGATTGGTTTGTATGAG CCTGTGAAAAACTTCTATGTTGGCCCTGACTTTGTTGGTGACGTTCCTCTGTCAAAGAAGATTCTAGCTGCACTTACAACTGGCGCTGTAGGGATCTCAA TTGCCAATCCAACTGATCTTGTGAAAGTACGTCTCCAGTCTGAGGGGAAGTTAGCACCTGGTGTGCCAAGACGCTATTCTGGAGCTATAAATGCTTATTC CACCATAGTCAAACAGGAAGGAGTTCGTGCCCTTTGGACTGGAGTTGGCCCAAATATTGCACGGAATGCTATCATAAATGCTGCTGAACTAGCCAGTTAT GATCAAGTGAAAGAAGACAATGCTGTCACTCATCTCTTTGCTGGTCTGGGGGCTGGATTCTTCGCCGTCTGTATTGGTTCTCCAGTTGATGTGGTTAAGT CTAGAATGATGGGTGATCCAAGTTACAAAAGCACGATCGACTGTTTTGTGAAGACATTGAAGAACGATGGGCCTCTTGCCTTCTACAAAGGTTTCATCCC AAACTTCGGGCGCCTTGGATCCTGGAATGTGATCATGTTCCTAACCTTAGAACAGGCGAAGAAGTTTATCAGGAATCTGGAATCTCCGTCATCTTAA
AA sequence Show only first row Show all	>Lus10017187 pacid=23165769 polypeptide=Lus10017187 locus=Lus10017187.g ID=Lus10017187.BGIv1.0 annot-version=v1.0 MVADGKAKSDISLAGTFASSAFAACFAEICTIPLDTAKVRLQLQKSAVSGDVLTAPKYNGMLGTVATIAREEGAASLWKGIIPGLHRQCLFGGLRIGLYE PVKNFYVGPDFVGDVPLSKKILAALTTGAVGISIANPTDLVKVRLQSEGKLAPGVPRRYSGAINAYSTIVKQEGVRALWTGVGPNIARNAIINAAELASY DQVKEDNAVTHLFAGLGAGFFAVCIGSPVDVVKSRMMGDPSYKSTIDCFVKTLKNDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQAKKFIRNLESPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10017187 [exp]	0	1
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10010507 [exp]	2.4	0.8045
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10021123 [exp]	8.2	0.8554
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10043314 [exp]	12.4	0.8131
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	13.0	0.7797
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	13.0	0.7611
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	18.6	0.8106
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031688 [exp]	19.8	0.7994
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	30.2	0.7552
AT4G32360			Pyridine nucleotide-disulphide...		Lus10015217 [exp]	42.4	0.7507
AT5G65490			unknown protein		Lus10002654 [exp]	42.7	0.7779

Compare expression of checked genes

Lus10017187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.