Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38010 1036 / 0 Neutral/alkaline non-lysosomal ceramidase (.1.2) AT1G07380 998 / 0 Neutral/alkaline non-lysosomal ceramidase (.1) AT5G58980 930 / 0 Neutral/alkaline non-lysosomal ceramidase (.1) AT1G07070 163 / 6e-47 Ribosomal protein L35Ae family protein (.1) AT1G74270 162 / 7e-47 Ribosomal protein L35Ae family protein (.1) AT1G41880 157 / 4e-45 Ribosomal protein L35Ae family protein (.1) AT3G55750 157 / 6e-45 Ribosomal protein L35Ae family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021122 [exp] 1352 / 0 AT2G38010 1096 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10005873 [exp] 1033 / 0 AT1G07380 1178 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10034564 [exp] 377 / 2e-122 AT5G58980 458 / 9e-156 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10001198 [exp] 363 / 2e-119 AT1G07380 384 / 4e-129 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10034565 [exp] 348 / 1e-113 AT1G07380 356 / 5e-118 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10021121 [exp] 176 / 1e-50 AT1G07070 197 / 6e-66 Ribosomal protein L35Ae family protein (.1) Lus10027754 [exp] 165 / 4e-47 AT1G74270 196 / 7e-66 Ribosomal protein L35Ae family protein (.1) Lus10035539 [exp] 160 / 4e-46 AT1G74270 215 / 4e-74 Ribosomal protein L35Ae family protein (.1) Lus10040235 [exp] 157 / 7e-45 AT1G41880 207 / 7e-71 Ribosomal protein L35Ae family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110000 [exp] 1088 / 0 AT1G07380 1137 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.001G247400 [exp] 1047 / 0 AT1G07380 1172 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.009G040600 [exp] 1039 / 0 AT1G07380 1188 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.002G013300 [exp] 819 / 0 AT2G38010 885 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Potri.010G194200 [exp] 163 / 5e-47 AT1G07070 219 / 8e-76 Ribosomal protein L35Ae family protein (.1) Potri.008G063200 [exp] 162 / 1e-46 AT1G07070 216 / 2e-74 Ribosomal protein L35Ae family protein (.1) Potri.008G059400 [exp] 161 / 2e-46 AT1G74270 216 / 1e-74 Ribosomal protein L35Ae family protein (.1) Potri.010G199400 [exp] 160 / 7e-46 AT1G07070 214 / 1e-73 Ribosomal protein L35Ae family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF01247 [flax] [poplar] Ribosomal_L35Ae Ribosomal protein L35Ae CL0575 [flax] [poplar] PF04734 [flax] [poplar] Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10017188 pacid=23165752 polypeptide=Lus10017188 locus=Lus10017188.g ID=Lus10017188.BGIv1.0 annot-version=v1.0 ATGGTGAAGGGCAGTCAGGGAGAGCGCGTCAGATCGAAGTCGAACCAGTACCCGAACACTTCTCTGATACAGATCGAAGGAGTGAACACCAAGGAAGACG TGAGCTGGTACCAGGGGAAGAAAATGGCGTATATCTACAAGGCCAAGGTGAAGAAGAATGGGAGTCACTACCGCTGCATTTGGGGCAAGGTGACTAGGCC ACATGGTAACAGTGGTGTTGTCCGAGCTAAGTTCACCTCCAACCTCCCACCCAAGTGCATGATTGCAGAAAATCAGTTGACTTTCTTCAAATTGCTTCCT CATTTGTTTCCAACGCCAGTACATAAGCAAGCATTACTCTGCCAACACTTCATTCCTTCTCAACTGGGAAAAATAATGGCGATCTCTTTCTTCCACACAG CCTTTCTCCTCCTCCTCCTCCTCCTACCAACCTTCTCTTCCGCTTCAAATTACTTGATCGGACTAGGAACCTACGACATTACTGGACCCGCCGCCGACGT CAACATGATGGGCTACGCCAACACCGACCAAGTAACCTCCGGCGTCCATTTCCGCCTCCGCGCCCGCGCCTTCATCGTCGCGGACCCCACCGGGAAGCAG CGTGTAGCCTATGTCAACCTTGACGCCTGTATGGCTTCCCAGATCGTCACCATCAAAGTCCTCGAACGGCTCAAAGCTAGGTATGGGGATGTTTACACGG AGAAGAATGTGGCGATAAGTGGGATCCACACACACGCTGGGCCAGGAGGATATCTTCAGTATGTGATCTATATTGTTACTTCGCTTGGGTTCGTCCGTCA GTCTTTTGACGCCGTTGTTGATGGGATTGAGCAGAGTATTGTTCTTGCTCATCAGAATCTCCGGCCGGGTTCTATCTCCGTTAACACAGGGGAGCTGTTA GATGCAGGGGTGAACCGCAGCCCAAGTTCATACCTCAACAACCCGCCATCCGAGAGGGCGAAGTACAAATACAACGTCGACAAAGAAATGACACTCATCA AGTTCATAGACGACGAGTTCGGCCCGATTGGCACGTTCAACTGGTTCGCAACTCACGGAACCTCCATGAGCCGTACCAATTCCTTGATCAGCGGCGATAA CAAAGGAGCCGCAGCCCGGTTCATGGAGGACTGGTTCGAAAAGCGAACCATTACCGAACCAACCGAAACAACAACAACAAGTACGGAGCTGCTGGAGATC GCGTCGTCGTTCAAGTCATCCACCGGTCAGAATTCGACCGTTGATTCCAGCGTTTCGAAACGGGCCAGGAGGAGCCAAGGGACGATGTCGTCTCAGAAGA GGAAGCCGCAATTCGTTTCGGCATTCTGTCAAACGAATTGCGGAGATGTGAGTCCCAATGTTCTCGGAGCTTTCTGTACGGGCACCGGACTTGCTTGCGA TTTCAATCACAGTACCTGCAATGGCAAGAATGAGCTCTGCTACGGCCGAGGTCCAGGTTACCCGGACGAGTTCGAGAGCACGAGAGTGATCGGGGAAAGA CAGTTCAGGAAGGCAGTAGAGTTATTCAATGGCGCCAAAGAGCAGCTGAAAGGGAAGATCGATTACAGGCATGAATATGTGGATTTTTCAAATCTGGAAG TGGCTATGGGGGAGAATGGTGAGGTAGTGAAAACGTGTCCTGCTGCAATGGGGTTTGCGTTTGCTGCTGGAACCACTGATGGACCTGGAGCTTTTGATTT CAAGCAAGGAGATGATAAGGGGAATGCGTTCTGGAAGCTAGTGGGGGGAGTTTTGAAGGCACCAGGGCCAGAGCAGGTGAAATGTCAGAAACCAAAGCCT ATCTTGCTTGATACTGGTGAAATGAAGCTACCTTATGACTGGGCACCAGCGATTCTTCCAGTTCAAATCATGAGGGTTGGCCAGCTTGTGATTCTGAATG TACCTGGAGAGTTTAGCACAATGGCTGGAAGGCGCCTAAGAGACGCGGTGAGAGCACTGCTTACTTCAGTGGGTGGGAAAGCGTTCAACAATGTCCATAT TGTTATCTCTGGACTCACTAATACCTACTCGCAGTATGTTACGACCTTCGAGGAGTACCAAGTTCAAAGATACGAGGGTGCATCCACTCTATACGGTCCA CACACACTGAGCGCATACATCCAGGAATTCAACAAACTTGCCACAGCCATGGTTCGAGGCCAGCCGATCGATTCGGGCCCACAGCCGCCAGATCTCCTGG ACAAGCAAATCAGTCTTCTGGCTCCAGTGGTTGTGGATTCAGCTCCCTTGGGGAAAAGCTTCGGAGACATGAAACTTGACGTGCAAGCAAACGCTGCCTT TAAAAAGGGTGAAATGGTATCGGTCACCTTCCACTCGGCCTGTCCGAGGAACGATCTCAAGACGGAAGGCACCTTCGCGCTGGTGGAGTATTATAAGAAA TCATCTTCTTCATCGTGGGTCCCCGTTTACGACGATGATGATTTCTGTCTGCGGTTTAAGTGGTCGAGGCCTGCAAAATTGAGTCCCGAAAGCTATGCAA CTATAGAGTGGAGGATACCAGAAAATGCAGCTTCCGGTGTGTATAAGATCAGTCATTTCGGTGCTGCGAAATCGATTTTCGGATCGATCAGTCATTTCAG TGGGTCTTCCAGTGCGTTTGTAGTGCTGTAG
AA sequence Show only first row Show all	>Lus10017188 pacid=23165752 polypeptide=Lus10017188 locus=Lus10017188.g ID=Lus10017188.BGIv1.0 annot-version=v1.0 MVKGSQGERVRSKSNQYPNTSLIQIEGVNTKEDVSWYQGKKMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKCMIAENQLTFFKLLP HLFPTPVHKQALLCQHFIPSQLGKIMAISFFHTAFLLLLLLLPTFSSASNYLIGLGTYDITGPAADVNMMGYANTDQVTSGVHFRLRARAFIVADPTGKQ RVAYVNLDACMASQIVTIKVLERLKARYGDVYTEKNVAISGIHTHAGPGGYLQYVIYIVTSLGFVRQSFDAVVDGIEQSIVLAHQNLRPGSISVNTGELL DAGVNRSPSSYLNNPPSERAKYKYNVDKEMTLIKFIDDEFGPIGTFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEKRTITEPTETTTTSTELLEI ASSFKSSTGQNSTVDSSVSKRARRSQGTMSSQKRKPQFVSAFCQTNCGDVSPNVLGAFCTGTGLACDFNHSTCNGKNELCYGRGPGYPDEFESTRVIGER QFRKAVELFNGAKEQLKGKIDYRHEYVDFSNLEVAMGENGEVVKTCPAAMGFAFAAGTTDGPGAFDFKQGDDKGNAFWKLVGGVLKAPGPEQVKCQKPKP ILLDTGEMKLPYDWAPAILPVQIMRVGQLVILNVPGEFSTMAGRRLRDAVRALLTSVGGKAFNNVHIVISGLTNTYSQYVTTFEEYQVQRYEGASTLYGP HTLSAYIQEFNKLATAMVRGQPIDSGPQPPDLLDKQISLLAPVVVDSAPLGKSFGDMKLDVQANAAFKKGEMVSVTFHSACPRNDLKTEGTFALVEYYKK SSSSSWVPVYDDDDFCLRFKWSRPAKLSPESYATIEWRIPENAASGVYKISHFGAAKSIFGSISHFSGSSSAFVVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10017188 [exp]	0	1
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10028755 [exp]	4.1	0.8166
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10021122 [exp]	5.0	0.8928
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	7.7	0.8586
AT3G51380		IQD20	IQ-domain 20 (.1)		Lus10041844 [exp]	14.5	0.7893
AT2G23810		TET8	tetraspanin8 (.1)		Lus10018792 [exp]	17.5	0.8506
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	18.4	0.8557
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	22.1	0.8374
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10008590 [exp]	22.8	0.8266
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	27.0	0.8246
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	28.3	0.8171

Compare expression of checked genes

Lus10017188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.