Plant FIBer expression Database

Lus10017189 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38000 565 / 0 chaperone protein dnaJ-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021120
[exp]
793 / 0 AT2G38000 577 / 0.0 chaperone protein dnaJ-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G095400
[exp]
630 / 0 AT2G38000 531 / 0.0 chaperone protein dnaJ-related (.1)
PFAM info
Representative CDS sequence
>Lus10017189 pacid=23165797 polypeptide=Lus10017189 locus=Lus10017189.g ID=Lus10017189.BGIv1.0 annot-version=v1.0
ATGGAGCAGCCGCTGCTCTCAGGTGGTCGATTGGGAGAGGAGAAGGAAAGCGGGGGGTGGAGCTCGTATGAGTATCTGGGTCGAACTGGTTCGGTGATTC
CCACCGGTTCTTTGGTGGGTACCGAAGTCAGCGTTGATGAAATCCGCTCGGCGGCCGCTTCTTCGAATATCTACCCGCCGTCGATTCATGCTCCGTTGGT
CAGTTCGCCGGAACCTCTTGCTTATCAAGGCCATGGTGGTTACGGCCAGCAGTACGGTGGAAGCACCGATGGACATCAGAAGCAAATATTGGACGAGGTT
GAAATTAGGGAGTTACTGATTGACCATATCGGCCACCGATGCTGCTGGGGAAGTAGACCTGCTAGAACCTGGAAAATTCATGCAGTGGAAGACTGCAATG
TGTATGTCGGTACACTCGAAACGTTCATAGAGGAAAGGAAAACTATAAGTGAAACAGAACCATATACTAGCGCCAGTAGCATTGTTGGGAAGGATTGTGA
TCGGCCTGCACTTGGTGTATGGGAACTGGATTTGAGGTCTCAATTTCCTGTTTTTTTCTCACCTTATAAAGAAACTCAAGTCAAAGTTCCTGGCTCCGAG
GTAATCGAGAAATGCAGTGACTGTGCTGGTAGGGGAGATATCGTGTGTCCCGAATGCAATCCGAACCAAGAGCACGGGTTTTATAAGGAGAATCAGATGT
TTGAGTGTTCTGTCTGCTACGGAAGAGGATTGATTGCTCATCGTGATGGATCTGACTCGATATGCAAAAACTGTAAGGGAAAGGGAAAGCTTCCGTGCGC
GACTTGTGGATCTCGTGGACTCGTAAAATGCAAGAAATGTGTCGGAAGTGGATCTCTCTTGACGCAAAATGTTGCAATCGTCAGATGGAAGACGCTTTCG
ACTCGAAAGGTGAGCGCAACTAGCGGTGCAGCATCAGTCCCAGAGGAAGTTTTCCACCAGGCGAAAGGAGTCCAGCTCTGCAATACGCAGGCACACCAGT
GCACTCCGGCCTACTTTGCAGACTCGTACTTCCTCAACAAGTTCTCGTCGGAAGTCATTGCCGGGAAGGCTCCTGTGCCTCCTTCCGCGAGGGTCATCTG
CGAGAGGCATGCCATATCTGTCGTGCCAGTGTCCCGTGTCACCATGTCTAACCACCGTGGGAGCTCGTTCAGCTTTTATGTCATCGGGTTTAGCAAGGAG
GTGTACTTGAAGGACTACTATCCAGCCAGGTTTTGCTGGGGACTCTGCCCTTGCCTTGAGTGGTTAAAGTTGTGA
AA sequence
>Lus10017189 pacid=23165797 polypeptide=Lus10017189 locus=Lus10017189.g ID=Lus10017189.BGIv1.0 annot-version=v1.0
MEQPLLSGGRLGEEKESGGWSSYEYLGRTGSVIPTGSLVGTEVSVDEIRSAAASSNIYPPSIHAPLVSSPEPLAYQGHGGYGQQYGGSTDGHQKQILDEV
EIRELLIDHIGHRCCWGSRPARTWKIHAVEDCNVYVGTLETFIEERKTISETEPYTSASSIVGKDCDRPALGVWELDLRSQFPVFFSPYKETQVKVPGSE
VIEKCSDCAGRGDIVCPECNPNQEHGFYKENQMFECSVCYGRGLIAHRDGSDSICKNCKGKGKLPCATCGSRGLVKCKKCVGSGSLLTQNVAIVRWKTLS
TRKVSATSGAASVPEEVFHQAKGVQLCNTQAHQCTPAYFADSYFLNKFSSEVIAGKAPVPPSARVICERHAISVVPVSRVTMSNHRGSSFSFYVIGFSKE
VYLKDYYPARFCWGLCPCLEWLKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G38000 chaperone protein dnaJ-related... Lus10017189
[exp]
0 1
AT5G24910 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P... Lus10008423
[exp]
40.8 0.8670
AT1G33970 P-loop containing nucleoside t... Lus10005299
[exp]
62.6 0.8630
AT2G40180 ATHPP2C5 phosphatase 2C5 (.1) Lus10030340
[exp]
73.1 0.8658
AT5G44070 ATPCS1, ARA8, C... CADMIUM SENSITIVE 1, ARABIDOPS... Lus10024921
[exp]
86.7 0.8649
AT4G17550 AtG3Pp4 glycerol-3-phosphate permease ... Lus10004358
[exp]
101.0 0.8326
AT4G01630 ATEXP17, ATHEXP... EXPANSIN 17, expansin A17 (.1) Lus10038013
[exp]
103.0 0.8576
AT5G66350 SHI SHORT INTERNODES, Lateral root... Lus10009697
[exp]
124.4 0.8545
AT3G54110 ATUCP1, UCP1, U... ARABIDOPSIS THALIANA UNCOUPLIN... Lus10021123
[exp]
141.4 0.8372
AT3G54020 AtIPCS1 Arabidopsis Inositol phosphory... Lus10021111
[exp]
169.9 0.8251
AT1G01290 CNX3 cofactor of nitrate reductase ... Lus10036661
[exp]
173.8 0.8491

Lus10017189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.