Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37980 754 / 0 O-fucosyltransferase family protein (.1) AT3G54100 741 / 0 O-fucosyltransferase family protein (.1) AT5G01100 649 / 0 O-fucosyltransferase family protein (.1) AT5G35570 575 / 0 O-fucosyltransferase family protein (.1) AT5G15740 397 / 7e-132 RRT1 O-fucosyltransferase family protein (.1) AT1G14020 396 / 2e-131 O-fucosyltransferase family protein (.1) AT3G02250 396 / 2e-131 O-fucosyltransferase family protein (.1) AT5G64600 392 / 5e-130 O-fucosyltransferase family protein (.1) AT1G22460 393 / 1e-129 O-fucosyltransferase family protein (.1) AT2G03280 375 / 9e-124 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021119 [exp] 1138 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 958 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 940 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 590 / 0 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 589 / 0 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 562 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 555 / 0 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 416 / 5e-139 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 401 / 2e-133 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109700 [exp] 759 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 745 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 588 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 416 / 5e-139 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 414 / 2e-138 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 409 / 1e-136 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 400 / 5e-133 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 399 / 2e-132 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 395 / 3e-131 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 394 / 5e-131 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017190 pacid=23165787 polypeptide=Lus10017190 locus=Lus10017190.g ID=Lus10017190.BGIv1.0 annot-version=v1.0 ATGTCGTCCGGTGGTAACGCAGCAGCCTCCTCCACCAACGTCAGCCCCGGCGGCCCAACCACCACGCGGCGGCGAGCGGATTCCCACGGAGTTGACAACG AGGAAGCCGGAGGAGGAGGATTAGGAGGAGGAGGAGGAAACAACAACAACATCTCAGCTCTACTTCCCAACACCACCCTGCACCCGGTGATCAGGTACCT TCTTCTGCGGCGGAAGCTGTTCTTCTTCCTGCCTGAAGTCCTCCTGGTCGGGTTCGACGAAGGCTGCCAGCGCGCGGCGGCAATGGCGCAAGGGATGAGA TCCGGGAAGAACACCGGGAGGAGGATTATCGCTGCCTTGATGTTTATGGCGGTTGTTTCGGTGTTTGTTAAGGTTTTTCTATTGAGTCATCATTTTGATT ATCTCCTCCTCGAGAGTCACAATCGTAGCAGCGACGAAGGCGGCGCTGGAGGCGGGGGTGTTGATGGTGGTGGTGTTAAAGAGATGAACGGACTGCTGAT TCTCCAGACTTTTAAGCACGATTGGGCCATGGCGCAACGTGTCCTCTCCGAAACTCAATCCTCCATTCCCAAACGCCTCCTCGAGAAATTCCCGACTCCA GAAATTTGGATGAAGCCATACAGTGACAACATCTACAAGTGTATAACTAGGCCGAGAAAGCAATTAAAATCAAGGAAAACGAATGGGTATCTGCTTGTTC ATGCCAATGGTGGGTTAAATCAGATGAGAACAGGGATTTGTGACATGGTTGCTGCTGCCAAGTTGATGAATGCAACCCTGGTTCTTCCTTCCCTCGACCA CGAATCATTCTGGACTGATCCCAGTACGTTTAAGGATATATTTGACTGGAGGCACTTCATGAATGTGTTGAAAGATGATGTTGAAATAGTTGAATACTTG CCACCCCAGTTTGCAAGGAAGAAGCCTCTTGTCAAGGCTCCAATCTCTTGGTCCAAGGCTAGCTACTACAGAGGAGAGACTGTATTGTTAAAGAAGCACA AAGTTATCAAATACACACACACGGACTCCAGACTGGCCAATAATGGCCTTGCATCTTCTATTCAGAAGCTCAGGTGCCGAGCCAATTATGCAGCTCTCCG TTACTCCCAAGAGATCGAGGATCTCAGCAGGATATTGGTGGCCCGGCTGAGAAAGAACAATGAGCCTTTTGTTGCTCTGCATCTTAGGTATGAGAAAGAC ATGCTATCTTTCACGGGATGCAACCACAACCTTACTTCACAGGAAGCCGAGGAGCTTCGAATAATGAGGTACGGCGTTCAGCACTGGAAGGAGAAAGAGA TCGACAGCGAAGCTAGAAGGCAAGAAGGAGGGTGTCCCATGTCTCCTAGAGAGGCTGCCATGTTTCTCAAGGCCATGGGATATCCTTCCTCCACAACCAT CTACATTGTTGCAGGACCGATCTACGGAGGCAATAGCATGGCAGCATTTCGAGAAGAGTATCCGAACGTGTTCACTCATTCTACTCTAGCGACTGAGGAA GAGCTCGAGCCGTTCAAGGCGTACCAGAATCGTCTGGCTGCTCTTGATTACATTGTGGCTCTGGACAGTGATGTGTTTGTTTATACTTACGATGGAAATA TGGCTAAGGCGGTTCAGGGTCATCGGCGGTTCGAAGGTTTCAGGAAGACCATCAACCCGGACAGGCAAAACTTCGTGGCGCTGATCGATCAGTTGGACGA GGGATCCCTTTCGTTCGAAGAGTTCTCGTCGCAAGTCAGAAGATTACACGCTCACAGAATCGGACAGCCATATCTGAGGAGGGTAGGGGAATCACCAAGG CTGGAGGAGAACTTCTACGCAAACCCGATTCCAGGCTGCTTGTGCAACCGGACTCAGGAGCAGTTAAGTACCTTAGCAGCAATCGAACGGAGACGAGCCA ATCTTGGAACCGCATCGCAGAGGTGA
AA sequence Show only first row Show all	>Lus10017190 pacid=23165787 polypeptide=Lus10017190 locus=Lus10017190.g ID=Lus10017190.BGIv1.0 annot-version=v1.0 MSSGGNAAASSTNVSPGGPTTTRRRADSHGVDNEEAGGGGLGGGGGNNNNISALLPNTTLHPVIRYLLLRRKLFFFLPEVLLVGFDEGCQRAAAMAQGMR SGKNTGRRIIAALMFMAVVSVFVKVFLLSHHFDYLLLESHNRSSDEGGAGGGGVDGGGVKEMNGLLILQTFKHDWAMAQRVLSETQSSIPKRLLEKFPTP EIWMKPYSDNIYKCITRPRKQLKSRKTNGYLLVHANGGLNQMRTGICDMVAAAKLMNATLVLPSLDHESFWTDPSTFKDIFDWRHFMNVLKDDVEIVEYL PPQFARKKPLVKAPISWSKASYYRGETVLLKKHKVIKYTHTDSRLANNGLASSIQKLRCRANYAALRYSQEIEDLSRILVARLRKNNEPFVALHLRYEKD MLSFTGCNHNLTSQEAEELRIMRYGVQHWKEKEIDSEARRQEGGCPMSPREAAMFLKAMGYPSSTTIYIVAGPIYGGNSMAAFREEYPNVFTHSTLATEE ELEPFKAYQNRLAALDYIVALDSDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRQNFVALIDQLDEGSLSFEEFSSQVRRLHAHRIGQPYLRRVGESPR LEENFYANPIPGCLCNRTQEQLSTLAAIERRRANLGTASQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	0	1
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	1.4	0.9695
					Lus10006091 [exp]	2.4	0.9595
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	2.8	0.9454
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	5.9	0.9441
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	6.5	0.9459
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10042916 [exp]	6.9	0.8769
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026609 [exp]	7.0	0.8765
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	7.0	0.9284
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	7.3	0.9224
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	8.5	0.9234

Compare expression of checked genes

Lus10017190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.