Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54090 654 / 0 FLN1 fructokinase-like 1 (.1) AT1G69200 309 / 2e-98 FLN2 fructokinase-like 2 (.1) AT1G06020 192 / 1e-56 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 191 / 2e-56 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 190 / 4e-56 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 184 / 6e-54 STH pfkB-like carbohydrate kinase family protein (.1) AT1G66430 184 / 3e-53 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 180 / 3e-52 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 176 / 8e-51 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 59 / 3e-10 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021118 [exp] 934 / 0 AT3G54090 676 / 0.0 fructokinase-like 1 (.1) Lus10037064 [exp] 305 / 2e-97 AT1G69200 592 / 0.0 fructokinase-like 2 (.1) Lus10036920 [exp] 295 / 2e-94 AT1G69200 582 / 0.0 fructokinase-like 2 (.1) Lus10013611 [exp] 193 / 3e-57 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 190 / 3e-56 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 190 / 6e-56 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 182 / 5e-53 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 175 / 5e-51 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 172 / 7e-49 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109600 [exp] 615 / 0 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.008G097300 [exp] 340 / 3e-110 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.012G132700 [exp] 189 / 3e-55 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 184 / 2e-53 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 181 / 1e-52 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 181 / 1e-52 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 181 / 2e-52 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 181 / 3e-52 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 170 / 4e-48 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.002G042700 [exp] 44 / 0.0003 AT1G06730 546 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10017191 pacid=23165767 polypeptide=Lus10017191 locus=Lus10017191.g ID=Lus10017191.BGIv1.0 annot-version=v1.0 ATGGCTACATTTCTTCTATCTCGTTCCTTATTCTTAAACCCTACTTATCCTTCCACAGCTCCACCTCCAGGATTTGGAAAGAAACCTTATTGTTTCGTAA AGATTCTGAGAGTACCAAAAGCAACCATCAATGGCGACAACGGAGCTGCTGAAATCGAATCCTCCTCAAAGCCATCTCGCCGCGGCCGGAAAAAGAAGCC CACTTCGGAATCTTCTCCATCTCCTTCCGGCGACGTTCCACCGAAAAGACCGAGAGGGAGACCCAGGAAGGTAATCGTTGAAGACGATAACCAAGAGCAA GCCAAAGAGGGTCCATCACCGGAGCCTGTGGTAGAACGAGAAGTGGGCGATTTCGACGACGGAGTGGATCTCCCATACGATTCCCCGCCGTTAGTGTGCT GCTTCGGCTCTCCACACAAAGAATTCGTCCCTACGGTGAGGGTGCACGACGATCCGATGCACCCGGACATGTACTCGGAGTGGAAGATGCTCCAATGGGA CCCGCCGGACTTTGCCAGGGCTCCAGGTGGGCCGCCGTCGAACGTGGCGATCGCGCACGTGCGGCTCGGCGGCAGGGCGGCTTTTATGGGGAAAGTTGGG GATGATCCCCTTGGGGAGGAGATGGTGCTGATGATGAACAAGGAGAATGTCCAGACTCGAGCTGTGAAGTTCGATGAGAATTTCAAAACTGCTTGTACTT ACATGAAGGTTAAGTTTGAAGATGGGAAGTTGAAGATGGAGGCTTCCAAGGATGCTGCTGAGCACTCTCTTCTCACCTCTGAATTGAACCTCTCTGTGCT CAAGGAGGCAAGGATGTTCCACTTCAATTCCGAAGTGCTGACATCACCATCGATGCAATCAACTCTATACAAAGCAATCGAGTGGTCGAAACATTTCGGC AGCCTCATATTCTTCGATCCGAATCTGCCACTGCCACTATGGAAGAATCGCGACGAGACTCGTGAGCTGATCAAGAAAGCCTGGGAAGAATCCGACATCA TCGAGGTCTCGAGGCAAGAGCTCGAGTTCCTCCTCGATGAAAGATACTACGAGTGGCTCAAAAACTACAAGCCGCAGTACTACTCGGAGAGCTTCGAGCA ATCAAAGGGAAGGAGGAACCACCACCATTACTCCCCCGAGGAGTTAGCCCCACTGTGGCACGACAAGCTCAAGTTCTTGTTCGTGACCGACGGAACCCTA CATATTCATTACTACACTCCGAAATTTCACGGTTCAGTAGTTGGGACGGAGGATACGCTCATCACTCCGTTTACGTGTGACAGAACAGGGTCTGGGGATG CAGTTGTGGCTGCTATAATGAGAAAGCTGACTACGTGTCCGGAAATGTATGAGGATCAGGATTTATTGGAGAGGCAGCTGCGGTTTGTCGTATCGGCGGG GATCATTTCGCAGTGGACGATTGGTGCTGTGAGAGGGTTTCCGACGGAGAATGCGGCTCAGAATCTCAAGGAACAGGTTTATGTTCCTTCCATGTGGTAG
AA sequence Show only first row Show all	>Lus10017191 pacid=23165767 polypeptide=Lus10017191 locus=Lus10017191.g ID=Lus10017191.BGIv1.0 annot-version=v1.0 MATFLLSRSLFLNPTYPSTAPPPGFGKKPYCFVKILRVPKATINGDNGAAEIESSSKPSRRGRKKKPTSESSPSPSGDVPPKRPRGRPRKVIVEDDNQEQ AKEGPSPEPVVEREVGDFDDGVDLPYDSPPLVCCFGSPHKEFVPTVRVHDDPMHPDMYSEWKMLQWDPPDFARAPGGPPSNVAIAHVRLGGRAAFMGKVG DDPLGEEMVLMMNKENVQTRAVKFDENFKTACTYMKVKFEDGKLKMEASKDAAEHSLLTSELNLSVLKEARMFHFNSEVLTSPSMQSTLYKAIEWSKHFG SLIFFDPNLPLPLWKNRDETRELIKKAWEESDIIEVSRQELEFLLDERYYEWLKNYKPQYYSESFEQSKGRRNHHHYSPEELAPLWHDKLKFLFVTDGTL HIHYYTPKFHGSVVGTEDTLITPFTCDRTGSGDAVVAAIMRKLTTCPEMYEDQDLLERQLRFVVSAGIISQWTIGAVRGFPTENAAQNLKEQVYVPSMW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	0	1
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Lus10009197 [exp]	1.7	0.9472
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	2.4	0.9439
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	3.0	0.9421
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	4.0	0.9285
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	4.2	0.9278
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	4.9	0.9368
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	4.9	0.9381
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	5.3	0.9413
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	6.2	0.9305
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	6.6	0.9337

Compare expression of checked genes

Lus10017191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.