Plant FIBer expression Database

Lus10017192 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37975 89 / 5e-25 Yos1-like protein (.1)
AT3G54085 81 / 4e-22 Yos1-like protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000226
[exp]
100 / 9e-30 AT2G37975 129 / 6e-41 Yos1-like protein (.1)
Lus10040237
[exp]
50 / 8e-09 AT1G51740 439 / 2e-154 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G109500
[exp]
86 / 5e-24 AT2G37975 78 / 1e-20 Yos1-like protein (.1)
Potri.008G063000
[exp]
74 / 3e-19 AT2G37975 72 / 2e-18 Yos1-like protein (.1)
Potri.010G194400
[exp]
74 / 3e-19 AT2G37975 72 / 2e-18 Yos1-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08571 Yos1 Yos1-like
Representative CDS sequence
>Lus10017192 pacid=23165789 polypeptide=Lus10017192 locus=Lus10017192.g ID=Lus10017192.BGIv1.0 annot-version=v1.0
ATGGGGTTCTGGACGTTAATGGAAGGTCTTCTACTGATGGCAAACGCGATGGCGATTCTGAACGAGGACAGGTTTCTTTCTCCAAGAGGATGGACGCTTG
CAGAGCTTCAAGGCGGAAGGAGAAACTCACTCAAGGGACAGATCATTGGCCTAATCCACGCTTGCCAGTTCATGAGGCTACCTCTTATCATCCTCAACAT
CCTCGTCATCGTCGTCAAGCTTGTTTCTGGGTGA
AA sequence
>Lus10017192 pacid=23165789 polypeptide=Lus10017192 locus=Lus10017192.g ID=Lus10017192.BGIv1.0 annot-version=v1.0
MGFWTLMEGLLLMANAMAILNEDRFLSPRGWTLAELQGGRRNSLKGQIIGLIHACQFMRLPLIILNILVIVVKLVSG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37975 Yos1-like protein (.1) Lus10017192
[exp]
0 1
AT1G21770 Acyl-CoA N-acyltransferases (N... Lus10018168
[exp]
2.2 0.8060
AT2G39550 GGB, ATGGT-IB, ... GERANYLGERANYLTRANSFERASE-I BE... Lus10040303
[exp]
4.0 0.7545
AT1G11760 MED32 unknown protein Lus10033295
[exp]
4.9 0.7826
AT4G09550 ATGIP1 ARABIDOPSIS ATGCP3 INTERACTING... Lus10040621
[exp]
7.9 0.7609
AT1G16000 unknown protein Lus10023116
[exp]
9.9 0.7434
AT1G12260 NAC ANAC007, VND4, ... VASCULAR RELATED NAC-DOMAIN PR... Lus10019638
[exp]
10.1 0.7716
AT5G49060 Heat shock protein DnaJ, N-ter... Lus10006515
[exp]
13.0 0.7696
AT5G09900 RPN5A, MSA, EMB... REGULATORY PARTICLE NON-ATPASE... Lus10006797
[exp]
14.3 0.7441
AT5G01600 ATFER1 ARABIDOPSIS THALIANA FERRETIN ... Lus10012233
[exp]
15.8 0.7518
AT4G38495 unknown protein Lus10004196
[exp]
22.0 0.6877

Lus10017192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.