Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37970 258 / 3e-88 SOUL-1 SOUL heme-binding family protein (.1) AT3G10130 76 / 2e-16 SOUL heme-binding family protein (.1) AT5G20140 67 / 4e-13 SOUL heme-binding family protein (.1.2) AT1G17100 51 / 7e-08 SOUL heme-binding family protein (.1) AT1G78460 43 / 4e-05 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000227 [exp] 293 / 5e-102 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1) Lus10027752 [exp] 285 / 4e-99 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10000106 [exp] 216 / 3e-72 AT2G37970 207 / 3e-68 SOUL heme-binding family protein (.1) Lus10035541 [exp] 133 / 3e-40 AT2G37970 131 / 2e-39 SOUL heme-binding family protein (.1) Lus10022712 [exp] 93 / 1e-22 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10014203 [exp] 79 / 9e-18 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10013345 [exp] 66 / 2e-12 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2) Lus10019445 [exp] 58 / 6e-10 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2) Lus10001847 [exp] 54 / 2e-08 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109400 [exp] 281 / 1e-97 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.016G098500 [exp] 74 / 8e-16 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 69 / 1e-13 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.015G080000 [exp] 60 / 4e-11 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1) Potri.012G088400 [exp] 49 / 4e-07 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1) Potri.010G044200 [exp] 47 / 3e-06 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10017193 pacid=23165810 polypeptide=Lus10017193 locus=Lus10017193.g ID=Lus10017193.BGIv1.0 annot-version=v1.0 ATGGGTATGGTACTGGGCAGAATCGCAGTCGAAGTCCCCAAATACGAGCTCGTCAAATCCTGCAGCGAGTACGAGATCCGCAAATACGGTCCATCAGTCG CCGCACAAGTCACCTACGATCCGTCTCAGTTCAAGGGCAACAAAGACGGCGGCTTCATGGTGCTCGCCAATTACATCGGCGCTCTAGGGAACCCTCAGAA CTCCAAGCCGGAGAAGATCGCGATGACCGCTCCGGTCATCACCGCTGCAGAGAAAATAGACATGACAGCTCCAGTAGTGACCAAACCAGAAGGAGATAAC AGCACTATGATGACGATGCAATTTCTACTGCCGGCGAAGTATCAGAAGGCGGAGGACGCTCCTCAGCCGTTGGATGAGAGGGTGGTGATCAAGGAAGTCG GCGAGAGGAAGTACGGTGTGACTCAGTTTTCTGGGATAGCGAGTGATGAGGTGGTGGCTGAGAGGTTGGAGAAGCTGAAGAAAAGCTTGGAGAAAGATGG GTATAAGATAGTCGGAGAGCATCTGCTTGCTAGGTATAATCCGCCGTGGACTCTTCCTCCTTTCAGGACTAACGAGATCATGGTCCCAATCGAGTGA
AA sequence Show only first row Show all	>Lus10017193 pacid=23165810 polypeptide=Lus10017193 locus=Lus10017193.g ID=Lus10017193.BGIv1.0 annot-version=v1.0 MGMVLGRIAVEVPKYELVKSCSEYEIRKYGPSVAAQVTYDPSQFKGNKDGGFMVLANYIGALGNPQNSKPEKIAMTAPVITAAEKIDMTAPVVTKPEGDN STMMTMQFLLPAKYQKAEDAPQPLDERVVIKEVGERKYGVTQFSGIASDEVVAERLEKLKKSLEKDGYKIVGEHLLARYNPPWTLPPFRTNEIMVPIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	0	1
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	1.7	0.9464
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	3.5	0.9349
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	3.5	0.9339
AT3G47070			unknown protein		Lus10018216 [exp]	4.2	0.9294
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	6.0	0.9038
AT5G55570			unknown protein		Lus10008950 [exp]	6.0	0.9333
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	7.1	0.9303
AT4G16380			Heavy metal transport/detoxifi...		Lus10000039 [exp]	7.5	0.9094
AT1G22750			unknown protein		Lus10028718 [exp]	8.0	0.9065
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	8.4	0.9189

Compare expression of checked genes

Lus10017193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.