Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01090 173 / 1e-50 Concanavalin A-like lectin family protein (.1) AT3G09190 127 / 1e-33 Concanavalin A-like lectin family protein (.1) AT3G09035 121 / 3e-31 Concanavalin A-like lectin family protein (.1) AT3G54080 89 / 2e-19 Concanavalin A-like lectin family protein (.1) AT3G55550 77 / 3e-15 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 71 / 3e-13 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 68 / 4e-12 Concanavalin A-like lectin protein kinase family protein (.1) AT2G29250 63 / 1e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 63 / 1e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT2G29220 62 / 2e-10 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021117 [exp] 504 / 3e-180 AT5G01090 210 / 5e-65 Concanavalin A-like lectin family protein (.1) Lus10035542 [exp] 242 / 3e-77 AT5G01090 175 / 1e-51 Concanavalin A-like lectin family protein (.1) Lus10027751 [exp] 239 / 5e-76 AT5G01090 166 / 6e-48 Concanavalin A-like lectin family protein (.1) Lus10003224 [exp] 78 / 2e-15 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 71 / 5e-13 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 70 / 7e-13 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 70 / 1e-12 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004709 [exp] 67 / 3e-12 AT3G55550 257 / 1e-80 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 67 / 9e-12 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094900 [exp] 301 / 4e-100 AT5G01090 265 / 2e-86 Concanavalin A-like lectin family protein (.1) Potri.016G107200 [exp] 288 / 2e-95 AT5G01090 230 / 9e-73 Concanavalin A-like lectin family protein (.1) Potri.010G194700 [exp] 137 / 3e-37 AT5G01090 117 / 5e-30 Concanavalin A-like lectin family protein (.1) Potri.010G200600 [exp] 80 / 5e-16 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 72 / 2e-13 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 69 / 1e-12 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 68 / 4e-12 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 67 / 8e-12 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035800 [exp] 65 / 3e-11 AT3G53810 540 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035601 [exp] 65 / 3e-11 AT3G45430 498 / 3e-169 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10017194 pacid=23165794 polypeptide=Lus10017194 locus=Lus10017194.g ID=Lus10017194.BGIv1.0 annot-version=v1.0 ATGGCGGCCATTTCCTCTGCCCTCCTAGCTTTATCACTCTTTTTCTACTTCAATCTGCTCCTTGCAGATCCTAATACCACTACTCCCTCCTTTTCCTTCC TCAAATTTGACAAAGATCCAAACTTTGACTCAACATTATCCCTCTACGGCGATGCAAAGCTCGTCGGCCTTAACACGTCATCATCCTCCATCCAGCTGAC TCACTCCGTCAGCTCGACCGGCGGCAGAGTCATGTACAAGAAACCAATCAAGCTCCTTCACAACAACGATTCATCCGCGGCTTCTTTCTCAACTTACTTC TCTTTCCTCATCTCCCCGGACAACGGCGGCGACGGTCTTGCTCTGGTCATGGCCCCCGCCGCCGAATTCAACGCCACTCTGTTCGTAAAGAACACTCCTT TCGGTCTTTCTCTCCGGTCAACGGAGAAAAACCGGTCGAGAATCGTGGCGGTTGAATATGGTGCTTCCAAAGATGCAAAGAACGGATCTTTGAACGACGA CCATGTCGGAATCGACGTCGGCGGGTTCGTATCGGTAAAGGTAAGAAACGTTTCGTCAGTCAACGCATTGTTGAAGAGCGGAGTCAGATTGCATTCATGG GTTGACTATGAAGCTGGTTCCAAAAGGTTAGAAGTCAGATTGAGTCAATTCGGCGGCGGCGGGAGGAGAAAGCCCGTTGACCCTCTTCTCTCGTACCCGA TTGACTTGTCGGAGATGTGGAATGACGAGGAGGTCCTCATAGGGTTGAGCTCCTCCAATGGAAATTCCTCCCAGAACTGCTTTCTCTACTCTTGGAGCTT CCAGCTGAGGCGGTTCCCTCGATGGATGCATTCACAGCCGTTGGATCCCAATCGGAAGGATTCAAGTTTGAAACCTGTGGTGGTGGTGGTGAGCAGTGAG AAAAAGAGTGACTGTTTGGTGTGGGTGATTTCAGCTCTGGTTTTGGGAATTGGGTGTGGAGGGTTAGGAGCATTCATGGTGATGAAGCTTTGTGCCATGT TCGGGAAGAGGAATCCGGTGGCGCCGGAGGTTGTTGATCCGGTGGAATTTGATTATGAGAAGGTGAAAGTGATGGTGGTTTTGGATGATGATAAGGTTCT CAAAGATGGGAAGCAGTAG
AA sequence Show only first row Show all	>Lus10017194 pacid=23165794 polypeptide=Lus10017194 locus=Lus10017194.g ID=Lus10017194.BGIv1.0 annot-version=v1.0 MAAISSALLALSLFFYFNLLLADPNTTTPSFSFLKFDKDPNFDSTLSLYGDAKLVGLNTSSSSIQLTHSVSSTGGRVMYKKPIKLLHNNDSSAASFSTYF SFLISPDNGGDGLALVMAPAAEFNATLFVKNTPFGLSLRSTEKNRSRIVAVEYGASKDAKNGSLNDDHVGIDVGGFVSVKVRNVSSVNALLKSGVRLHSW VDYEAGSKRLEVRLSQFGGGGRRKPVDPLLSYPIDLSEMWNDEEVLIGLSSSNGNSSQNCFLYSWSFQLRRFPRWMHSQPLDPNRKDSSLKPVVVVVSSE KKSDCLVWVISALVLGIGCGGLGAFMVMKLCAMFGKRNPVAPEVVDPVEFDYEKVKVMVVLDDDKVLKDGKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	0	1
AT5G17210			Protein of unknown function (D...		Lus10010077 [exp]	1.4	0.8803
					Lus10034878 [exp]	2.8	0.8224
AT1G28120			unknown protein		Lus10030429 [exp]	3.7	0.8458
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10041288 [exp]	4.6	0.8449
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	5.0	0.8382
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	6.5	0.8283
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	6.6	0.8415
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10033577 [exp]	10.8	0.7677
AT5G08060			unknown protein		Lus10034681 [exp]	11.0	0.8126
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	11.2	0.8205

Compare expression of checked genes

Lus10017194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.