Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54050 578 / 0 HCEF1 high cyclic electron flow 1 (.1.2) AT1G43670 300 / 1e-99 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) AT5G64380 246 / 7e-78 Inositol monophosphatase family protein (.1) AT3G55800 82 / 7e-17 SBPASE sedoheptulose-bisphosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021115 [exp] 653 / 0 AT3G54050 647 / 0.0 high cyclic electron flow 1 (.1.2) Lus10027748 [exp] 631 / 0 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10035545 [exp] 631 / 0 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10018885 [exp] 305 / 3e-101 AT1G43670 620 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10028580 [exp] 303 / 1e-100 AT1G43670 618 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10007061 [exp] 244 / 7e-77 AT5G64380 549 / 0.0 Inositol monophosphatase family protein (.1) Lus10020433 [exp] 227 / 2e-70 AT5G64380 528 / 0.0 Inositol monophosphatase family protein (.1) Lus10028261 [exp] 81 / 3e-16 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1) Lus10040228 [exp] 80 / 4e-16 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106900 [exp] 595 / 0 AT3G54050 619 / 0.0 high cyclic electron flow 1 (.1.2) Potri.016G109000 [exp] 475 / 3e-167 AT3G54050 526 / 0.0 high cyclic electron flow 1 (.1.2) Potri.005G191400 [exp] 301 / 6e-100 AT1G43670 609 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.002G069000 [exp] 300 / 2e-99 AT1G43670 619 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.017G042900 [exp] 241 / 5e-76 AT5G64380 552 / 0.0 Inositol monophosphatase family protein (.1) Potri.008G063800 [exp] 80 / 3e-16 AT3G55800 629 / 0.0 sedoheptulose-bisphosphatase (.1) Potri.010G193300 [exp] 80 / 4e-16 AT3G55800 625 / 0.0 sedoheptulose-bisphosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00316 [flax] [poplar] FBPase Fructose-1-6-bisphosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017195 pacid=23165765 polypeptide=Lus10017195 locus=Lus10017195.g ID=Lus10017195.BGIv1.0 annot-version=v1.0 ATGGCGACTGCGGCCGGAGCTGCTCGTCTTCTATCCTCCTCCTCAACTCCCCGCTCTCTTTCCCGCCTCTCGCCTTTCCAAGTCTGTGTTATCGACTCCA AATCTCTGGTTTCATTCGGTAGGAGGAGGAACAACGTCGCCGGGGGTTCTGGTTTCAAATGCTCTGCCGTCGGGACGGCGCCGTCGGAGGCGGCAACGAC GACGAAGAAGAGGAGTAGCTACGAGATTCTGACGCTGACGACCTGGCTTCTGCAGCAGGAACAGGCCGGAGTGATCGACGCCGAGCTCACGATTGTGCTC TCCAGCATCTCCACGGCGTGTAAGCAGATCGCTTCTCTAGTTCAGCGATCCGGGATTTCTAACCTCACCGGCGTCCAGGGCGCCGTCAATGTCCAGGGTG AGGATCAGAAGAAGCTCGACGTCGTTTCGAACGAGGTGTTTTCAAATTGCTTGAGGTCGAGCGGCAGGACGGGGATCATAGCGTCGGAGGAAGAAGACGT GCCGGTCGCCGTGGAGGAAAGCTACTCCGGTAACTATATCGTAGTGTTCGATCCACTTGATGGATCGTCAAACATCGATGCCGCAGTCTCCACCGGCTCA ATCTTCGGAATCTACAGTCCCAACGATGAGTGCCTGGCCGACATCGGAGACGGAGACGAGTCAAATGTAAAAGATACTAAGGAACTAGATACTCAGGAGC AGAAGTGTGTGGTGAGCGTGTGCCAGCCGGGGAGCAACCTACTCGCCGCCGGCTACTGCATGTACTCAAGCTCGGTGATCTTCGTCCTCACGATCGGAAA CGGCGTTTTCGCCTTCAATCTGGACCCAATGTACGGCGAATTGGTGTTGACTCAAGAGAACATTCAGATCCCGAAAGCGGGAAAGATCTACTCATTCAAC GAAGGGAACTACCAAATGTGGGATGAGAAATTGAAGAAGTACATCGACGACCTCAAGGATCCTGGTCCCAGCGGGAAGCCTTACTCCGCTCGCTACATCG GAAGCTTGGTCGGGGATTTCCACCGGACGTTGCTCTACGGTGGGATTTACGGGTACCCGAGGGATATGAAGAGCAAGAACGGGAAATTGAGGCTGTTGTA TGAATGTGCACCGATGAGCTTTATTGTGGAGCAGGCTGGTGGAAAAGGATCGGATGGCCATGGGAGGATTCTTGATATACAACCACAGTCGTCAGCTTCC GGAGTCATTCAAAAGTTCAATGTCACAACCATTCACTAA
AA sequence Show only first row Show all	>Lus10017195 pacid=23165765 polypeptide=Lus10017195 locus=Lus10017195.g ID=Lus10017195.BGIv1.0 annot-version=v1.0 MATAAGAARLLSSSSTPRSLSRLSPFQVCVIDSKSLVSFGRRRNNVAGGSGFKCSAVGTAPSEAATTTKKRSSYEILTLTTWLLQQEQAGVIDAELTIVL SSISTACKQIASLVQRSGISNLTGVQGAVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGS IFGIYSPNDECLADIGDGDESNVKDTKELDTQEQKCVVSVCQPGSNLLAAGYCMYSSSVIFVLTIGNGVFAFNLDPMYGELVLTQENIQIPKAGKIYSFN EGNYQMWDEKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDMKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHGRILDIQPQSSAS GVIQKFNVTTIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	0	1
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10010412 [exp]	1.0	0.9767
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	2.4	0.9716
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	4.5	0.9533
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10040841 [exp]	4.7	0.9429
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	4.9	0.9498
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	5.3	0.9490
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	6.2	0.9563
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10018218 [exp]	7.2	0.9420
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10042429 [exp]	7.7	0.9515
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	8.5	0.9428

Compare expression of checked genes

Lus10017195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.