Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 168 / 3e-52 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 150 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G37950 148 / 3e-44 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 116 / 1e-31 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 71 / 8e-15 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 65 / 8e-12 RING/U-box superfamily protein (.1.2.3.4) AT2G45530 59 / 2e-10 RING/U-box superfamily protein (.1) AT5G03180 59 / 5e-10 RING/U-box superfamily protein (.1.2) AT3G06330 56 / 4e-09 RING/U-box superfamily protein (.1.2.3) AT3G09760 56 / 8e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021113 [exp] 269 / 4e-92 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 195 / 3e-62 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 193 / 2e-61 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 175 / 8e-55 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 171 / 3e-53 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 147 / 4e-44 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 142 / 4e-42 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 101 / 1e-25 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 100 / 2e-25 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105900 [exp] 192 / 3e-61 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 191 / 9e-61 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 180 / 7e-57 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 174 / 2e-54 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 140 / 9e-42 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 135 / 2e-39 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 95 / 2e-22 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 85 / 6e-19 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G024000 [exp] 66 / 3e-12 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.016G022900 [exp] 65 / 7e-12 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10017197 pacid=23165836 polypeptide=Lus10017197 locus=Lus10017197.g ID=Lus10017197.BGIv1.0 annot-version=v1.0 ATGTCAGTCATCGAAATGTCCCACCATCTCGATTTAGAGCAAGGGACGCAGCAATTCCACCTCTACCACCACCGCCACTGCCGCGGCGGCGACGGCGGAG GTAGCGATGAACTCAGCTGCTTCTCCGACGCGGAGGACGGAGATTCCACTCATTCCCAGTTCTACTCCACCGCCGGCGGCTCCTATTACAGCTCTGAAGG CGAGGGGAGGGCGTCGTCGGTGTCGGAGCGGTCAGTGGCGGTGGAGATCGAGGACGATGCCGTGGAGGCGGTGAAGGTAAATTACTTGGATAACAATAGT AATAAATCAGAAGAGAAAGACTGTAGGATTTGCCATCTGGGTTTGGAGAGCAACGTCCACGAATCCGGAATTCCGATTGAGCTGGGTTGTTCATGCAAGA ACGATTTGGCGGCTGCTCATAAACAGTGCGCCGAGACTTGGTTCAAGATCAAGGGAAATAAGACTTGTGAGATCTGCAACTCCATTGCTAGGAACGTTGC TGGAGTAACCGAGGCCGAAACAGTAGTACTGGTTGAACAATTGATCGACTCGAGCAATAACAACAACAACAACAACTCATCGGTAACGACTGTGGCTGCT GTAGCGTCGTCGCAACATTTGGAGGCCAATCGTAACTTTTGGCAAGGGCATCGGTTCCTGAATTTCCTGCTTGGTTGTATGGTGTTTGCATTTGTCATCT CCTGGCTTTTCCACTTCAATGTGCCATCTTCATAG
AA sequence Show only first row Show all	>Lus10017197 pacid=23165836 polypeptide=Lus10017197 locus=Lus10017197.g ID=Lus10017197.BGIv1.0 annot-version=v1.0 MSVIEMSHHLDLEQGTQQFHLYHHRHCRGGDGGGSDELSCFSDAEDGDSTHSQFYSTAGGSYYSSEGEGRASSVSERSVAVEIEDDAVEAVKVNYLDNNS NKSEEKDCRICHLGLESNVHESGIPIELGCSCKNDLAAAHKQCAETWFKIKGNKTCEICNSIARNVAGVTEAETVVLVEQLIDSSNNNNNNNSSVTTVAA VASSQHLEANRNFWQGHRFLNFLLGCMVFAFVISWLFHFNVPSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10017197 [exp]	0	1
AT2G34040			Apoptosis inhibitory protein 5...		Lus10013953 [exp]	9.6	0.7975
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031143 [exp]	22.8	0.7862
AT3G54750			unknown protein		Lus10015991 [exp]	33.5	0.7472
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10009315 [exp]	35.8	0.7531
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Lus10020646 [exp]	48.5	0.7578
AT5G55610			unknown protein		Lus10016608 [exp]	88.7	0.7085
AT1G78560			Sodium Bile acid symporter fam...		Lus10005565 [exp]	94.4	0.7205
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	208.9	0.6518

Compare expression of checked genes

Lus10017197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.