Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54030 602 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 557 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT1G63500 540 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 526 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G41260 513 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G35230 441 / 5e-152 BSK1 BR-signaling kinase 1 (.1) AT5G01060 435 / 8e-150 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G46570 426 / 3e-146 BSK2 BR-signaling kinase 2 (.1) AT3G09240 396 / 7e-135 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 371 / 7e-125 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021112 [exp] 842 / 0 AT3G54030 587 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 650 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10027743 [exp] 645 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 565 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10008530 [exp] 555 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 553 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 536 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10016454 [exp] 533 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10030383 [exp] 516 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093900 [exp] 647 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 638 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 574 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 570 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.001G104700 [exp] 533 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.002G158400 [exp] 533 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.003G126700 [exp] 531 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.014G179300 [exp] 439 / 3e-151 AT5G46570 814 / 0.0 BR-signaling kinase 2 (.1) Potri.004G182800 [exp] 437 / 1e-150 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.003G088900 [exp] 433 / 4e-149 AT5G46570 820 / 0.0 BR-signaling kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10017198 pacid=23165762 polypeptide=Lus10017198 locus=Lus10017198.g ID=Lus10017198.BGIv1.0 annot-version=v1.0 ATGGGAGTCCGTTGCTCCAAATTCACTCCCTGCAGCTGCTTCCACTCCAAGCATTCTGTTCTTGAAAGTACAGAGAAGGAAGAAAATGCAGATCAGGAGC AAAGTCCATGGCCGAGCTTCAAAGAGTTCAGCTTCGAGGAGTTGAAATCCGCCACGGGCGGGTTTTCCTCCGACAACATTGTGTCGGAGCACGGGGAGAA GGCTCCGAATGTTGTCTACAGAGGGGAGCTTGATGGAGCAGACCGGTTGATCGCGGTCAAGCGGTTTAACCGAATGGCTTGGCCCGATCCTCGACAGTTC TTAGAGGAAGCGAGGGAAGTCGGGAATCTGAGGAGCGATCGGTTGGCGAATCTGATCGGATGCTGCTACGAAGGCGACGAGAGATTGCTGGTCGCCGAGT TTATGCCGAATGACACTCTTGCCAAGCATCTGTTTCACTGGGAGAGCCAACCGATGAAATGGGCGATGAGGTTGCGAGTCGCTCTGTATCTGGCGCAAGC TTTGGATTACTGCAGCGACAAAGGGCGAGGGTTGTACCATGATCTCAATGCCTACAGGGTCCTTTTCGACAAGGCGCTCGACTTGATTCGGGGCAAGAAT TTCCTGATGCTGATGGATTCTGCATTGGAGGGCCGTTTCTCGAAAGATGACGGAACTGAGTTGGTGAGATTGGCTTCCCGTTGCTTGCAGCTCGAAGCTC GAGACAGGCCGAACGCAAATAGCCTCATCGCTTCACTTATTTCACTCCAGAAAGAAGCTGAGGTTCCATCCTATGTCTTGATGGGAATACCTCATGAAAC AGATTTGGAGGAACTACCGTTGACTCCGTTTGGCGAGGCCTGCTTGAGGAACGATCTGACTGCTGTTCATGAACTTCTGGAGAAAGTTGGATACAAGGAT GACGAAGGAATCGCCAACGAGCTGTCTTTCCAAATGTGGACGAATCAAATGCAGGAAACCTTGAACTCCAAGAAACACGGAGACAGTGCATTCCGAGCTA AAGATTTCCCCGCCGCAATCGACCTCTACACACAAAACAAATCTTTTTCTTCCACCGGTACGCTCATTCTTCCTCGAGCTGCTTTTTTTCATCAGTTTAT TGATGGCGGGACTATGGTGTCACCAACGGTGTACACGAGGCGGTGCCTGTCTTACTTGATGAATGAGATGCCACAAGAAGCACTTGAAGATGCCATGCAA GCTCAAGTTGTGTCCCCCGAGTGGCACATTGCCTTCTACCTTCACGCAGCTTGCCATTTCAGCCTTGGAATCGAGAACGATGCCAAGGAAGCTCTCAAAG TCGGCACTAAATTGGAAGCCAAAAGGAGCAAATAG
AA sequence Show only first row Show all	>Lus10017198 pacid=23165762 polypeptide=Lus10017198 locus=Lus10017198.g ID=Lus10017198.BGIv1.0 annot-version=v1.0 MGVRCSKFTPCSCFHSKHSVLESTEKEENADQEQSPWPSFKEFSFEELKSATGGFSSDNIVSEHGEKAPNVVYRGELDGADRLIAVKRFNRMAWPDPRQF LEEAREVGNLRSDRLANLIGCCYEGDERLLVAEFMPNDTLAKHLFHWESQPMKWAMRLRVALYLAQALDYCSDKGRGLYHDLNAYRVLFDKALDLIRGKN FLMLMDSALEGRFSKDDGTELVRLASRCLQLEARDRPNANSLIASLISLQKEAEVPSYVLMGIPHETDLEELPLTPFGEACLRNDLTAVHELLEKVGYKD DEGIANELSFQMWTNQMQETLNSKKHGDSAFRAKDFPAAIDLYTQNKSFSSTGTLILPRAAFFHQFIDGGTMVSPTVYTRRCLSYLMNEMPQEALEDAMQ AQVVSPEWHIAFYLHAACHFSLGIENDAKEALKVGTKLEAKRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54030			Protein kinase protein with te...		Lus10017198 [exp]	0	1
AT3G54030			Protein kinase protein with te...		Lus10021112 [exp]	2.4	0.8627
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	4.0	0.8595
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	5.8	0.8622
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	6.2	0.8621
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	6.7	0.8482
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	7.9	0.8264
AT3G59680			unknown protein		Lus10025594 [exp]	8.7	0.8182
AT2G40820			unknown protein		Lus10038998 [exp]	13.0	0.8358
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	13.9	0.8360
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	16.4	0.8262

Compare expression of checked genes

Lus10017198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.