Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54020 446 / 4e-159 AtIPCS1 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) AT2G37940 444 / 1e-158 ERH1, AtIPCS2 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) AT2G29525 379 / 5e-133 AtIPCS3 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021111 [exp] 598 / 0 AT3G54020 462 / 1e-165 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10027742 [exp] 524 / 0 AT3G54020 477 / 6e-171 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10035551 [exp] 521 / 0 AT3G54020 490 / 2e-176 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10040720 [exp] 375 / 2e-130 AT2G29525 399 / 6e-140 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093800 [exp] 470 / 2e-168 AT2G37940 490 / 2e-176 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) Potri.016G105700 [exp] 470 / 2e-168 AT3G54020 493 / 1e-177 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.001G246300 [exp] 366 / 3e-127 AT3G54020 374 / 2e-130 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.005G193300 [exp] 42 / 0.0005 AT1G43580 592 / 0.0 Sphingomyelin synthetase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017199 pacid=23165856 polypeptide=Lus10017199 locus=Lus10017199.g ID=Lus10017199.BGIv1.0 annot-version=v1.0 ATGACGCTTTACATTGGCCGGGAAGCTTCAAAGCTGTGGAAGAGAGTTTGTGCAGAAACAACTACGGAGATCATTCTTCTCGTCGAGAACTGGAGATACA TTCTTGCCGGCTTGATTTGTCAGTATATTCATGGGCTGGCTGCTAGGGGAGTCCATTATTTCCACAGACCAGGACCAGTGTTGCAAGATGCCGGTTTCTA TCTACTTCCGGAGCTTGGGCAAGATAAAGGTCACATTAGTGAAATGTTGTTCAGCTGTGTCTTTCTGTCCTTTGTGTTGTGGACATTCCATCCTTTCATC TTCAAGGTGAAGAAGGTGTACACAGTCCATTTGTGGTGCAGAGTTCTTGCATTTCTAGTTGCATCTCAATTTCTCCGGATCATCACGTTTTACTCTACAC AACTTCCCGGTCCTAACTACCACTGCCGAGAGGGCTCGAAATTTGCAAGACTACCACGTCCACAGAGTGTGCTTGAAGTATTCGTGATTAGCTCTCGGGG CATTATGTTTGGTTGCGGTGATTTGATCTTCTCGTCACACATGATCTTCACTTTGGTATTTGTCCGTACATATCACAAGTATGGATCACAAAGATGCATC AAGCAGTTAGCTTGGCTAGTTGCTGTGGTTCAGAGCCTTTTGATCATTGCATCCAGGAAGCACTACACGGTAGATGTTGTCGTCGCATGGTACACTGTTA ATTTGGTGGTGTTCTTTATAGACAATAAATTACCTGAACTACCTGACCGGACCGGTGGAGCTGCTGCATTGTTGCTACCAATAACTACCAAAGACAAAGA TGAAAAGACCAAAGAAGAGAATCACAAGCTCTTGAATGGAAACTCAGTAGACGATTGGAAGATCATGGAAGATACGAACGGTATCCCCCATACGAATGCG ATGAACGGGGCTTAG
AA sequence Show only first row Show all	>Lus10017199 pacid=23165856 polypeptide=Lus10017199 locus=Lus10017199.g ID=Lus10017199.BGIv1.0 annot-version=v1.0 MTLYIGREASKLWKRVCAETTTEIILLVENWRYILAGLICQYIHGLAARGVHYFHRPGPVLQDAGFYLLPELGQDKGHISEMLFSCVFLSFVLWTFHPFI FKVKKVYTVHLWCRVLAFLVASQFLRIITFYSTQLPGPNYHCREGSKFARLPRPQSVLEVFVISSRGIMFGCGDLIFSSHMIFTLVFVRTYHKYGSQRCI KQLAWLVAVVQSLLIIASRKHYTVDVVVAWYTVNLVVFFIDNKLPELPDRTGGAAALLLPITTKDKDEKTKEENHKLLNGNSVDDWKIMEDTNGIPHTNA MNGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10017199 [exp]	0	1
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	4.8	0.9131
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	7.5	0.8852
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	9.6	0.8880
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	13.6	0.8928
AT4G34660			SH3 domain-containing protein ...		Lus10028783 [exp]	14.2	0.8491
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	16.7	0.8959
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	26.6	0.8746
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	31.4	0.8878
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	33.8	0.8835
AT4G15630			Uncharacterised protein family...		Lus10012809 [exp]	40.3	0.8526

Compare expression of checked genes

Lus10017199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.