Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01030 229 / 5e-64 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G29510 197 / 2e-52 Protein of unknown function (DUF3527) (.1) AT5G59020 170 / 9e-44 Protein of unknown function (DUF3527) (.1) AT2G37930 154 / 5e-40 Protein of unknown function (DUF3527) (.1) AT2G33360 97 / 7e-21 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT1G63520 95 / 5e-20 Protein of unknown function (DUF3527) (.1) AT1G04490 92 / 2e-19 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT4G11450 72 / 1e-12 Protein of unknown function (DUF3527) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021110 [exp] 1420 / 0 AT5G01030 291 / 1e-86 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10016455 [exp] 180 / 4e-47 AT5G59020 293 / 2e-87 Protein of unknown function (DUF3527) (.1) Lus10040721 [exp] 179 / 6e-47 AT5G59020 291 / 1e-86 Protein of unknown function (DUF3527) (.1) Lus10014479 [exp] 96 / 4e-20 AT2G33360 287 / 4e-91 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10023729 [exp] 93 / 4e-19 AT2G33360 355 / 9e-115 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10002006 [exp] 72 / 2e-12 AT4G11450 477 / 3e-159 Protein of unknown function (DUF3527) (.1) Lus10035493 [exp] 54 / 4e-07 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093600 [exp] 428 / 7e-136 AT5G01030 219 / 6e-60 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.016G105500 [exp] 395 / 4e-123 AT5G01030 257 / 5e-73 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.009G039300 [exp] 253 / 1e-71 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1) Potri.001G246200 [exp] 242 / 2e-67 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.010G066200 [exp] 103 / 1e-22 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.008G171400 [exp] 95 / 5e-20 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.003G127500 [exp] 71 / 2e-12 AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) Potri.001G104200 [exp] 69 / 9e-12 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF12043 [flax] [poplar] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Lus10017200 pacid=23165847 polypeptide=Lus10017200 locus=Lus10017200.g ID=Lus10017200.BGIv1.0 annot-version=v1.0 ATGGAGAAGGCCAATTTGCCATCATCTGTTCAAGCTGGTGTTACTGTCACAAAACCCTGGAGGGAAATGGAGTTGAGTTTGGATGTCAATAGAATTCCGA GAGGGCGGCGAAATCCCAAGATGGAGAAGGAAACTGACCAACAAGTTGAAGTCATGCAGATATTGAAGTATCAGGAGAAGGTGAAAGGAAAGAGTTGTTC AGTTCAGCCTTGTAATGGTGCGGGGACTGATCTCGTGCAGCCTGTAAATAGTGAGAGAGCCCGAAAGAGCCAACATGAGTCTGTCAAGGCACCTAAGTTA CGAACTGAGGAGGTTGTGAGGTACATGTCTAATGTGCCTGGATTTCTCCAGCGGATGGAGAAAGGTGAGAACATACAAGGTAAGGCTTTGAACGTAGGAG TTCTTGATTGGAGACGTCTGGAAAAACTGAAGGGGAGCCAACGGTTTGGAGCACAAAGTGAGGGCAATGGTCGAATGCCGGCTAGTGGTCTGCATAGGTT CACTCGTTCTCATGATTTCGAATCAACTTCGAAGGGCAGCTTAGATGGTCAGAAAATAAGAGGTTGGAACCACAAGCCATTCGATAAAAAGGTCCCTTCA AAGGTGGGGAGCAGCTCACTTGAATCAGGAAGTAGTGAAGGCCAAGTACGACTCCGTGAAAATTCTATTGCTTTTTCTGGTGATGCCAAGAGACATCAGG CAGGAAAAACTTCAGGCGTAAAGCTGGTTGCAGATCGGAGAAGCTCACGGAGCTTTATGAGTTCATCATCTGAGTTGAAAGGTTGTGACATTTCACTCGT TCCAAAGGATAGGAATATGGGTCATAACAAAGTTCGAAACAAACCAGAGGAGGCTTCACGAAGTTCAACAACCATTGTTTCTCCAGAGGGTGAAGTTAAA CATGGGGAGAAAGTCGTTCTTCTTGTACCTACAAAACGTTCCCAAAGTAGCTTTTCTGAGGAGCCTAGAGCATTACCATCTGGAAGCGGGAAAATTGCAG ATCTCAATGGCATTTCAGATAATCCTCGTTCATTTCCTCTGCCTCCAAGACTTGACACTAGCAAGTTGGTGCATGGTGATAGTATGTTGGCTACTGCACC TCGTACAGAATTGTCTTCTGCCAAGCACATTAGTAAGCGTTCTTTGGACAACTTTAAGTTTGCAAGAGATTACGATTCAGGAACTCAAACTGTGTCGGAC ATTGATCAGACAATTATGAAAGATACGCACCCTTCTCCAATTCGAGGCTTCCCCTTTAGCTTAGCTCGGTTGACCAGAAGTTTCAGTTCAAAGGAAAGTT CAACCATCCCACCGCTTAGCTCGGTCTACGAGTCCATTAAATCCGGCCCTGTGACGTCTCAAAGTTATGCTGGTTTAAGTATCCCTACAGAGGAGATGAC ATCTGGTCCCAGCAGAGCTAAATCAAGCCCGCTAAGAAGATTACTAGATCCATTGTTCAAGTCTAAGGTCTCCAAGTCTATGAAAGAGACCGCTAATTCC TCAGACTTGGAGCAGACGAACGACAGCGAGTCAATTCAGCACGATAAGCACGAGGAAGCAAGCATCCAAGCCGTTTTGCATGTTGCAGTTAGGAATGGAC TCCCTGTATTCAAGTTTCTGGTTGACAAAGTTGATGGCAAAGCCAGCATTCTGGCAGCAACCAAGAACGTATCCTCACCTAGAAAGAGCAATTCAGGATG CAGTTATACGTTCTATGCAATTGATGAAATCAAGAAAAGAAGTAACAGGTGGATAAGCCGAGGTTACAAGGATGAAAGATGTGAGTACACCTACAATGTG ATTGGCCAAATGAACGTCAACCACTCCCCTTTTCTAGGCTTAACAGGAGAGAATCTCACCGGCCATGAAACTTTCAGCGAGTATGTTCTGTTTGGGTTGG AGCTGGGGGGGAAATTAGGTGCAACATCACCACCCAAGCTCAGGCCAAGCAGGGAGCTTGGAGCAGTAATTGTGAGAACTCACAGTGTAAACATTGGCAC GCAGAAGCAAGTGGATTCGGCACGAAATGAACAGTCTATTAGTGTGACAGCCATACTTCCTGCTGCAGTACATGGTTTGCCGGAGAAGGGTGGTCCTTGG CCGTTGATTCAGAGATGGAGATCCGGCGGATCGTGTGATTGCGGAGGTTGGGACGTTGGTTGTGGACTCTGTGTTCTATCGGCAGCCGTCCAGGTGGCAT CGAATGGTTTCCAACTCTTTGCAGAGGGAGGAGGATCAAAAGAGGGAAAGCCAGTGTTCGTTATGAGGCCAGCTGAGAAGGGGATGTACTCGATCGAATT CAAACGGAGAATTTCGTTGGTTCAAGCATTCTTCATCGCTGTCACGGTTATACACTCGCAGAAACCATCCGATCTTGTGGACTTGACTATGGAGAAGGTT TTCCTGGAACCAGATGAACCGGTAAGGAAGATGAGTGCTCGAGCTAGCGGAGCAGCTACGAAATTCGCCCCGAGTCCGCCCCTTTCTCCGGTTGGAAGAA TCTAG
AA sequence Show only first row Show all	>Lus10017200 pacid=23165847 polypeptide=Lus10017200 locus=Lus10017200.g ID=Lus10017200.BGIv1.0 annot-version=v1.0 MEKANLPSSVQAGVTVTKPWREMELSLDVNRIPRGRRNPKMEKETDQQVEVMQILKYQEKVKGKSCSVQPCNGAGTDLVQPVNSERARKSQHESVKAPKL RTEEVVRYMSNVPGFLQRMEKGENIQGKALNVGVLDWRRLEKLKGSQRFGAQSEGNGRMPASGLHRFTRSHDFESTSKGSLDGQKIRGWNHKPFDKKVPS KVGSSSLESGSSEGQVRLRENSIAFSGDAKRHQAGKTSGVKLVADRRSSRSFMSSSSELKGCDISLVPKDRNMGHNKVRNKPEEASRSSTTIVSPEGEVK HGEKVVLLVPTKRSQSSFSEEPRALPSGSGKIADLNGISDNPRSFPLPPRLDTSKLVHGDSMLATAPRTELSSAKHISKRSLDNFKFARDYDSGTQTVSD IDQTIMKDTHPSPIRGFPFSLARLTRSFSSKESSTIPPLSSVYESIKSGPVTSQSYAGLSIPTEEMTSGPSRAKSSPLRRLLDPLFKSKVSKSMKETANS SDLEQTNDSESIQHDKHEEASIQAVLHVAVRNGLPVFKFLVDKVDGKASILAATKNVSSPRKSNSGCSYTFYAIDEIKKRSNRWISRGYKDERCEYTYNV IGQMNVNHSPFLGLTGENLTGHETFSEYVLFGLELGGKLGATSPPKLRPSRELGAVIVRTHSVNIGTQKQVDSARNEQSISVTAILPAAVHGLPEKGGPW PLIQRWRSGGSCDCGGWDVGCGLCVLSAAVQVASNGFQLFAEGGGSKEGKPVFVMRPAEKGMYSIEFKRRISLVQAFFIAVTVIHSQKPSDLVDLTMEKV FLEPDEPVRKMSARASGAATKFAPSPPLSPVGRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01030			Protein of unknown function (D...		Lus10017200 [exp]	0	1
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036471 [exp]	1.0	0.9432
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10024234 [exp]	3.9	0.8952
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	5.3	0.9134
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	7.9	0.9101
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	9.2	0.8717
AT5G08720			unknown protein		Lus10035962 [exp]	12.0	0.8992
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	13.6	0.8945
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	21.0	0.8840
AT5G57170			Tautomerase/MIF superfamily pr...		Lus10034783 [exp]	22.4	0.8353
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	23.2	0.8793

Compare expression of checked genes

Lus10017200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.