Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 337 / 4e-111 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 322 / 4e-105 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 320 / 2e-104 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 319 / 5e-104 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 313 / 5e-102 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 298 / 4e-96 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G11340 251 / 2e-78 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 238 / 5e-73 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT5G59590 237 / 7e-73 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G05860 236 / 1e-72 UGT76C2 UDP-glucosyl transferase 76C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004670 [exp] 367 / 2e-122 AT1G22340 313 / 1e-101 UDP-glucosyl transferase 85A7 (.1) Lus10009876 [exp] 366 / 3e-122 AT1G22380 295 / 2e-94 UDP-glucosyl transferase 85A3 (.1) Lus10014831 [exp] 360 / 6e-120 AT1G22380 296 / 5e-95 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 317 / 4e-103 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 311 / 4e-101 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 310 / 1e-100 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 310 / 1e-100 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 309 / 3e-100 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10010665 [exp] 305 / 2e-98 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105400 [exp] 528 / 0 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.016G105300 [exp] 526 / 0 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.008G062400 [exp] 439 / 6e-151 AT1G22380 344 / 8e-114 UDP-glucosyl transferase 85A3 (.1) Potri.002G098400 [exp] 336 / 8e-111 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G095000 [exp] 324 / 5e-106 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.016G021000 [exp] 319 / 3e-104 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 318 / 7e-104 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 317 / 2e-103 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023700 [exp] 317 / 3e-103 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.017G052166 [exp] 315 / 2e-102 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10017201 pacid=23165749 polypeptide=Lus10017201 locus=Lus10017201.g ID=Lus10017201.BGIv1.0 annot-version=v1.0 ATGGACGGATCATCCAACACATCGCCGGCGCCGCCGCACGTGGTGTTCCTCCCGTTCCCGGCGCAGGGACACATCAAGCCCATGTTCACACTAGCCAAGC TCCTCAGCCACGTCGCGAAATTCCGAATCACTCTCGTCAACACCCACCACAACCACGCGCTCCTCCAGCGTTCCCTCGACACGGCGGCGGCGGATTTCGG CGACAGTTTCCCTGATTTCCATTTCGCGTCCCTACCGGACGTCGTGGCCCACCAAGACGGGCAGTCCAACCTCGCGAACATCGCCCAGCTGCTCCCTGCG ATCAGGAACTCCAAGCCGGATTTTCATCGGCTGATGTTGGATCTACCCAGTGCGGCGACGTGTATAATCGTCGACGGAGTTATGTCTTACGGGATTGAAG TGGCGGAGGAGATTGGGATTCCGGCCATCACGTTCAGAACGTTCAGTGCGGTTGGCTTGTGGGTTTACTTCAATCTGGATAAGCTAACGGAGGATGGGTC CATTCCTATTCCAGGCAATGCCGACATGGACGAGCTCATCACTTCGATTCCAGGTCTCGAGGGAGTCCTTCGGTTACGGGACCTACCCAGCATGTGCAGG CCAGGACCCAGTAGCCAAGTGCTCAAGTTTTTCATTGACGAAACCAAATCGATGAAACGGGCTTCTGGTCTGATTCTCAACACCTTCGACGAGCTCGAAG GTTCAATAATATCCAAACTCTCTAGTACCATCTTCCCCAAAACCTATCCGGTCGGTCCGTTGCACGGCCTCTTGAACAATGTAGTCAAAGAACATCATTC AGACGGCGGGCTATGGAGAGAGGACAAAGGTTGCATGACGTGGCTAGAATCTCACCCGTCCAAATCGGTTGTGTACGTCAGCTTCGGAAGCCTGGTCGCG TTCACCGAGGCTCAGTTCATGGAGTTCTGGCACGGCTTGGTGAATACAGGGAAGCCGTTTTTGTGGGTTATAAGACCGGACTCGGTTTCCGGAGAAGACG GATCGATTCAGTCGGGTCGAATCATCTCGGGCCTGAAAGAAGCCCATGGTAACAAATGCTGTGTGGTGGATTGGGCTCCCCAGTTGGAAGTTCTGGCCCA TGAAGCCGTCGGTGGGTTTTTGACCCATAGTGGTTGGAACTCAACTTTGGAAGCTATACTAGAAGGAGTGCCGATGATTTGCTGGCCCCGATTCAGCGAC CAGCAGGTTAATAGCAGGGCTGTTAGTGACATCTGGAACGTTGGACTTGACATGAAGGACACGTGCGATAGATGGACGGTGGAGAAAATGGTTAGGGAGT TGATGGATGATAGCTGCAAGAGAGACGAGATAGTGAAATCAACGGCTGAGATTGCGAGATTGGCTCGGGATAGCATCAAGGAAGGTGGCTCTTCGTATTG TAATTTGGAGAAGTTGATTGCAGACGTTGGAGCAATGTGCTAG
AA sequence Show only first row Show all	>Lus10017201 pacid=23165749 polypeptide=Lus10017201 locus=Lus10017201.g ID=Lus10017201.BGIv1.0 annot-version=v1.0 MDGSSNTSPAPPHVVFLPFPAQGHIKPMFTLAKLLSHVAKFRITLVNTHHNHALLQRSLDTAAADFGDSFPDFHFASLPDVVAHQDGQSNLANIAQLLPA IRNSKPDFHRLMLDLPSAATCIIVDGVMSYGIEVAEEIGIPAITFRTFSAVGLWVYFNLDKLTEDGSIPIPGNADMDELITSIPGLEGVLRLRDLPSMCR PGPSSQVLKFFIDETKSMKRASGLILNTFDELEGSIISKLSSTIFPKTYPVGPLHGLLNNVVKEHHSDGGLWREDKGCMTWLESHPSKSVVYVSFGSLVA FTEAQFMEFWHGLVNTGKPFLWVIRPDSVSGEDGSIQSGRIISGLKEAHGNKCCVVDWAPQLEVLAHEAVGGFLTHSGWNSTLEAILEGVPMICWPRFSD QQVNSRAVSDIWNVGLDMKDTCDRWTVEKMVRELMDDSCKRDEIVKSTAEIARLARDSIKEGGSSYCNLEKLIADVGAMC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	0	1
AT2G21990			Protein of unknown function, D...		Lus10035847 [exp]	3.5	0.7536
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	3.6	0.8027
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019882 [exp]	5.5	0.7505
AT3G27250			unknown protein		Lus10014610 [exp]	7.7	0.7443
AT3G58060			Cation efflux family protein (...		Lus10016239 [exp]	8.1	0.7079
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10010554 [exp]	10.4	0.7136
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	18.1	0.7249
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	19.0	0.7387
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	19.2	0.7079
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	21.8	0.7383

Compare expression of checked genes

Lus10017201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.