Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59860 55 / 9e-10 HSP20-like chaperones superfamily protein (.1) AT1G53540 54 / 2e-09 HSP20-like chaperones superfamily protein (.1) AT1G07400 54 / 4e-09 HSP20-like chaperones superfamily protein (.1) AT2G29500 52 / 8e-09 HSP20-like chaperones superfamily protein (.1) AT5G59720 52 / 1e-08 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT3G46230 52 / 1e-08 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT4G10250 43 / 3e-05 ATHSP22.0 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021109 [exp] 170 / 6e-54 AT1G07400 95 / 6e-25 HSP20-like chaperones superfamily protein (.1) Lus10040830 [exp] 56 / 6e-10 AT1G53540 236 / 6e-81 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 55 / 1e-09 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 54 / 3e-09 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 54 / 4e-09 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 54 / 4e-09 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 53 / 8e-09 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 52 / 1e-08 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10021503 [exp] 51 / 1e-08 AT1G07400 82 / 3e-21 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081250 [exp] 56 / 3e-10 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 55 / 8e-10 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.008G062350 [exp] 54 / 2e-09 AT5G59720 196 / 3e-65 heat shock protein 18.2 (.1) Potri.008G062300 [exp] 54 / 2e-09 AT5G59720 198 / 9e-66 heat shock protein 18.2 (.1) Potri.004G187450 [exp] 54 / 2e-09 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 54 / 3e-09 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.019G081200 [exp] 53 / 5e-09 AT2G29500 186 / 3e-61 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 53 / 6e-09 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.010G195700 [exp] 52 / 9e-09 AT5G59720 190 / 1e-62 heat shock protein 18.2 (.1) Potri.009G039200 [exp] 52 / 1e-08 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10017202 pacid=23165830 polypeptide=Lus10017202 locus=Lus10017202.g ID=Lus10017202.BGIv1.0 annot-version=v1.0 ATGTCAATGTATCACAACAGCTTCAAACCTCACCATGGCCGCCGCCCTCACCACAATCCCTACAGCAACAATTTCCACCCTTACGAAGAATTCAACCCCT TCCCACAATTCGGATCCGCCGCCTTCCCTCCGTTTCCGCCGCCAATGTTCCACAACATGTTCCCACACCACGAATTTGCGGCGGCGGCAAATCGTCCACG CTCCGCCGTCGACTGGCACGAGACCCACGACGCGCACGTGATGACGGCCAAGCTACCCGGGTACAGAAAGGAGGAAGTGAAGCTTGAGCTTGAGGAAGAA GAGAGGCACGTGCTTCACCTGAGCTGCGAGAAGAAGTCCGATCACAAGGAAGAGAAATCGTCGTCGGCGGAGGATAATTACTACCACTCGGAGCGGAGCA ACGGCGGCAGGTTTGTCCAGCGCGTGACGCTGCCGGAGAATTCGAATCCGGAAAATATAAAGGCTGAGCTGGAGCATGGAGTGCTGACCGTCACAATTCC CAAGAAGAAGAAGGAGAGCAAGAAGAGAAGCTCGAGAATTATTCTCATCTCTTGA
AA sequence Show only first row Show all	>Lus10017202 pacid=23165830 polypeptide=Lus10017202 locus=Lus10017202.g ID=Lus10017202.BGIv1.0 annot-version=v1.0 MSMYHNSFKPHHGRRPHHNPYSNNFHPYEEFNPFPQFGSAAFPPFPPPMFHNMFPHHEFAAAANRPRSAVDWHETHDAHVMTAKLPGYRKEEVKLELEEE ERHVLHLSCEKKSDHKEEKSSSAEDNYYHSERSNGGRFVQRVTLPENSNPENIKAELEHGVLTVTIPKKKKESKKRSSRIILIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	0	1
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	1.0	0.9712
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	2.0	0.9617
AT3G10910			RING/U-box superfamily protein...		Lus10029037 [exp]	2.2	0.9494
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	3.0	0.9577
AT1G31335			unknown protein		Lus10040642 [exp]	3.7	0.9462
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	5.3	0.9507
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	5.7	0.9452
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10014821 [exp]	5.7	0.9301
AT5G27690			Heavy metal transport/detoxifi...		Lus10020906 [exp]	6.5	0.9465
					Lus10020401 [exp]	7.5	0.9349

Compare expression of checked genes

Lus10017202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.