Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59580 108 / 2e-28 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT2G26480 108 / 2e-28 UGT76D1 UDP-glucosyl transferase 76D1 (.1) AT3G11340 101 / 1e-25 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 100 / 3e-25 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G59590 99 / 6e-25 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G46680 97 / 4e-24 UDP-Glycosyltransferase superfamily protein (.1) AT3G46700 97 / 4e-24 UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 97 / 5e-24 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT5G05870 96 / 8e-24 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT1G22360 94 / 5e-23 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017201 [exp] 184 / 1e-56 AT1G22380 337 / 4e-111 UDP-glucosyl transferase 85A3 (.1) Lus10009876 [exp] 118 / 1e-31 AT1G22380 295 / 2e-94 UDP-glucosyl transferase 85A3 (.1) Lus10004670 [exp] 115 / 2e-30 AT1G22340 313 / 1e-101 UDP-glucosyl transferase 85A7 (.1) Lus10014831 [exp] 107 / 2e-27 AT1G22380 296 / 5e-95 UDP-glucosyl transferase 85A3 (.1) Lus10004673 [exp] 100 / 5e-27 AT3G11340 236 / 1e-76 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10041055 [exp] 104 / 1e-26 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10013925 [exp] 103 / 3e-26 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013924 [exp] 103 / 3e-26 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 102 / 6e-26 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105400 [exp] 177 / 5e-54 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.016G105300 [exp] 176 / 1e-53 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.008G062400 [exp] 144 / 2e-41 AT1G22380 344 / 8e-114 UDP-glucosyl transferase 85A3 (.1) Potri.006G022300 [exp] 110 / 1e-28 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G245900 [exp] 108 / 3e-28 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.006G023151 [exp] 106 / 2e-27 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G313000 [exp] 105 / 4e-27 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023700 [exp] 105 / 6e-27 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.016G021000 [exp] 104 / 7e-27 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021300 [exp] 103 / 2e-26 AT1G22400 522 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10017203 pacid=23165822 polypeptide=Lus10017203 locus=Lus10017203.g ID=Lus10017203.BGIv1.0 annot-version=v1.0 ATGTCTGGCAAACCTTTCCTGTGGGTGATACGGCGGGATTCGGTGTCCGGGCTTACCGATTCGAGCCGGGCCTTGTTGGCTAGTCTTGGAGGAACGACGG CGCGTGATGGTTCGTGTCTGATAGTGGACTGGGCCCCGCAGTTGGAAGTGCTGGCCCATCCAGCGGTGGGTGGGTTTTTCAGTCACGGTTGTTGGAACTC AGTGATGGTGTGCTGGCCCAAACTTGCCGACCAGCAAGTTAATAGTAGGGTGGTCAGTCACGTCTGGGGGAATGGGTTTGATATGAAGGACACGTGTGAC CGAGCAACGGTGGAGAAATTGGTCAGAGACTTGATAGATGACAGTCATGACGGTGAGATAGTGAAATCGACAGAGAAAGTTGCGAGGATGGCCAGAAATG GTATAAAGGAAGGTGGTCCTTCTTATGGTAATTTGAAGAGGCTGGTGAAGGATATCCAGTCAATGAACAAAAACAAGAGCTGA
AA sequence Show only first row Show all	>Lus10017203 pacid=23165822 polypeptide=Lus10017203 locus=Lus10017203.g ID=Lus10017203.BGIv1.0 annot-version=v1.0 MSGKPFLWVIRRDSVSGLTDSSRALLASLGGTTARDGSCLIVDWAPQLEVLAHPAVGGFFSHGCWNSVMVCWPKLADQQVNSRVVSHVWGNGFDMKDTCD RATVEKLVRDLIDDSHDGEIVKSTEKVARMARNGIKEGGPSYGNLKRLVKDIQSMNKNKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26480		UGT76D1	UDP-glucosyl transferase 76D1 ...		Lus10017203 [exp]	0	1
					Lus10035428 [exp]	1.0	0.9012
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10029135 [exp]	6.7	0.7505
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	7.1	0.8118
					Lus10020988 [exp]	7.9	0.7213
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	8.7	0.8118
					Lus10033071 [exp]	10.0	0.8118
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037631 [exp]	10.5	0.6012
					Lus10003695 [exp]	11.2	0.8118
					Lus10003774 [exp]	12.2	0.8118
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	13.2	0.8118

Compare expression of checked genes

Lus10017203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.