Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59040 87 / 1e-22 COPT3 copper transporter 3 (.1) AT2G26975 86 / 3e-22 Ctr copper transporter family (.1) AT2G37925 84 / 1e-21 COPT4 copper transporter 4 (.1) AT3G46900 83 / 5e-21 COPT2 copper transporter 2 (.1) AT5G59030 82 / 2e-20 COPT1 copper transporter 1 (.1) AT5G20650 52 / 5e-09 COPT5 copper transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021107 [exp] 248 / 2e-86 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10023045 [exp] 120 / 8e-36 AT2G26975 84 / 2e-21 Ctr copper transporter family (.1) Lus10032428 [exp] 109 / 2e-31 AT2G26975 87 / 1e-22 Ctr copper transporter family (.1) Lus10040726 [exp] 87 / 1e-22 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10016464 [exp] 84 / 3e-21 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10021108 [exp] 82 / 2e-20 AT2G37925 120 / 2e-35 copper transporter 4 (.1) Lus10017204 [exp] 57 / 2e-11 AT5G59030 88 / 3e-23 copper transporter 1 (.1) Lus10016463 [exp] 52 / 3e-09 AT2G26975 92 / 5e-25 Ctr copper transporter family (.1) Lus10012501 [exp] 50 / 2e-08 AT5G20650 177 / 5e-58 copper transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093200 [exp] 122 / 2e-36 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.009G038700 [exp] 98 / 7e-27 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.006G093300 [exp] 86 / 3e-22 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.009G038800 [exp] 83 / 5e-21 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.001G246000 [exp] 73 / 3e-17 AT5G59030 134 / 9e-41 copper transporter 1 (.1) Potri.006G140700 [exp] 53 / 2e-09 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 46 / 8e-07 AT5G20650 140 / 1e-43 copper transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10017205 pacid=23165791 polypeptide=Lus10017205 locus=Lus10017205.g ID=Lus10017205.BGIv1.0 annot-version=v1.0 ATGGACATGGGTTCGAATTCGATGGACGGCCCTTCGATGCACAACAACTTCTTCTGGGGGAAAGAAGTGATCTTGCTCTTCTCCGGATGGCCCGACCACA GTCTCCCTATGTACATTCTGGCGTGTTTGTGTGTCTTCTTCATGGCCGCTGGTGCAGAGTTCTTGTCACTTGCTCAATCGGTCAAGAGTTCAAAAAGTCT GGCGGTTGGGGCCGCCGTTGAGAAGTGCTTCTATGTGGTCAAGATGGCTCTTTCTTATATGGTCATGTTGGCTGTCATGTCCTTCAATTTGGGTGTCTTC ATCTCTGCCGTCCTCGGGCACTCCCTTGGGCTTTTCGTTGTAAAGAGGAATAGTGTGACAGTGTATGAGAGGTTCAATGCGAATGGCAGCAATGGGAGTG GATGA
AA sequence Show only first row Show all	>Lus10017205 pacid=23165791 polypeptide=Lus10017205 locus=Lus10017205.g ID=Lus10017205.BGIv1.0 annot-version=v1.0 MDMGSNSMDGPSMHNNFFWGKEVILLFSGWPDHSLPMYILACLCVFFMAAGAEFLSLAQSVKSSKSLAVGAAVEKCFYVVKMALSYMVMLAVMSFNLGVF ISAVLGHSLGLFVVKRNSVTVYERFNANGSNGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26975			Ctr copper transporter family ...		Lus10017205 [exp]	0	1
					Lus10024506 [exp]	1.4	0.8065
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	5.8	0.8110
					Lus10007991 [exp]	8.3	0.7973
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10005917 [exp]	12.8	0.6850
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	14.1	0.7124
					Lus10011962 [exp]	14.4	0.7749
AT3G05260			NAD(P)-binding Rossmann-fold s...		Lus10021931 [exp]	14.8	0.6232
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	16.1	0.7749
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	17.7	0.7749
AT1G50750			Plant mobile domain protein fa...		Lus10036654 [exp]	18.0	0.5806

Compare expression of checked genes

Lus10017205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.