Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54000 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021105 [exp] 241 / 3e-77 AT3G54000 90 / 8e-20 unknown protein Lus10021106 [exp] 61 / 4e-12 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105000 [exp] 110 / 4e-27 AT3G54000 73 / 4e-14 unknown protein Potri.006G093000 [exp] 83 / 1e-17 AT3G54000 79 / 9e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017206 pacid=23165855 polypeptide=Lus10017206 locus=Lus10017206.g ID=Lus10017206.BGIv1.0 annot-version=v1.0 ATGGCGCAGAGCGTCGACGACGGCGAGTTCTGGCTGCCTCCAGCGTTTCTCACCGACGACGACTTATTCACTGAGAAAAAGCAGCAGAAGGAGCGTGTGA AGGGCGCGGAGGATTTGCTTGCTTTGGAAACCGATTTCACTGCTTCGACCTCTCTCTTCTCGCATGACTTCCCATTCGGTTTTCGTTCCTTCGGTGTTTC TTCCGATCTCACCTCTCCAGTTGAGTCGGTGGTCAGCTCCACGGAGACGGAGAGTGACGAGGAGGAGGATTTGAGCCGGCGTTTGACTCGCACAACTCTG GACGATGACTTGTTCTTCTCCACAAAGGGGCGTGTATTGTCTGGATCTCCGCAATCCACGCTGTGTGGGGCCACCGGAAACGGTTGCGGTTGCAGGCAAG GTACGAACCGGCCAGTCTTGTCACAGCCACCGGCGACTTTGGATCTGCTCTTTGCTGCTGCCGGCGAGGTAGCCAAGATGAAAACCAACGGCGGTGGAGG TAGAGGATTATTAGGCGGATGTCCACCATCGCTGAGGGAACAGTCTCCAGTCACTGTCCCGTTGAAAAATTCTGACCACTGCGATGGTCAGAATTCTTAC CAGCAGCCGTCCCTGTCTTACCACCAGTTGCAGGCATCTCAACTGGTTCAACCACCGTTCTGCTTCCTGCAAGAGCTTGCACCAACAGTAGTGCAGTCCC TCGAATTGAACCTTGATAGAATGGCTGTTCAGCAGGCTTATCGTCGTCGTGTTGGTCCTGGTGCCCGTTTGACATTTGAAAACGATGCAATGGTTGCAAG GAATGGTAACGGCGGTCTCGATTTCGGTTCGAACGAGAAGCAGAGCTGGAGCAGCAGATCACCACCAGGAATGGAGGTGGAAGCTGGGTTACCACAGGAA TGGACTTACTGA
AA sequence Show only first row Show all	>Lus10017206 pacid=23165855 polypeptide=Lus10017206 locus=Lus10017206.g ID=Lus10017206.BGIv1.0 annot-version=v1.0 MAQSVDDGEFWLPPAFLTDDDLFTEKKQQKERVKGAEDLLALETDFTASTSLFSHDFPFGFRSFGVSSDLTSPVESVVSSTETESDEEEDLSRRLTRTTL DDDLFFSTKGRVLSGSPQSTLCGATGNGCGCRQGTNRPVLSQPPATLDLLFAAAGEVAKMKTNGGGGRGLLGGCPPSLREQSPVTVPLKNSDHCDGQNSY QQPSLSYHQLQASQLVQPPFCFLQELAPTVVQSLELNLDRMAVQQAYRRRVGPGARLTFENDAMVARNGNGGLDFGSNEKQSWSSRSPPGMEVEAGLPQE WTY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54000			unknown protein		Lus10017206 [exp]	0	1
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Lus10007004 [exp]	1.0	0.8674
AT5G42200			RING/U-box superfamily protein...		Lus10017253 [exp]	9.5	0.7837
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	12.2	0.8498
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029266 [exp]	19.3	0.7989
					Lus10005454 [exp]	21.6	0.8374
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10039195 [exp]	22.8	0.8030
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	23.9	0.8454
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	26.0	0.8463
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	29.2	0.8366
AT3G24460			Serinc-domain containing serin...		Lus10017728 [exp]	30.6	0.7886

Compare expression of checked genes

Lus10017206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.