Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09270 92 / 6e-23 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29420 60 / 7e-11 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT5G02020 52 / 2e-08 SIS Salt Induced Serine rich, unknown protein AT1G78320 50 / 2e-07 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT1G27130 49 / 6e-07 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1) AT1G69930 49 / 8e-07 ATGSTU11 glutathione S-transferase TAU 11 (.1) AT2G29490 48 / 1e-06 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29480 47 / 1e-06 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT1G69920 48 / 2e-06 ATGSTU12 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, glutathione S-transferase TAU 12 (.1) AT1G17190 47 / 2e-06 ATGSTU26 glutathione S-transferase tau 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021102 [exp] 221 / 6e-73 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10021101 [exp] 179 / 5e-57 AT5G02020 117 / 1e-33 Salt Induced Serine rich, unknown protein Lus10021103 [exp] 167 / 9e-52 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10017208 [exp] 140 / 3e-41 AT3G09270 212 / 3e-69 glutathione S-transferase TAU 8 (.1) Lus10040727 [exp] 81 / 2e-18 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 79 / 1e-17 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 77 / 5e-17 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 74 / 9e-16 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 74 / 9e-16 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092400 [exp] 91 / 7e-23 AT5G02020 122 / 2e-36 Salt Induced Serine rich, unknown protein Potri.010G070900 [exp] 83 / 3e-19 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.006G024200 [exp] 73 / 9e-16 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023340 [exp] 73 / 1e-15 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023200 [exp] 71 / 6e-15 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.012G052200 [exp] 67 / 1e-13 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061401 [exp] 64 / 5e-13 AT3G09270 113 / 7e-32 glutathione S-transferase TAU 8 (.1) Potri.010G061200 [exp] 66 / 7e-13 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.013G072400 [exp] 65 / 1e-12 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.010G032800 [exp] 64 / 4e-12 AT1G10370 303 / 3e-105 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017209 pacid=23165828 polypeptide=Lus10017209 locus=Lus10017209.g ID=Lus10017209.BGIv1.0 annot-version=v1.0 ATGTCTGTTACTGGAGATTGCGTGTTGGGGAGAGAATCGTTGCGTCCTGAGAAGGATGATCCTACACACCAGCCATGGAGCACCGCCAAACTTGGAGCTC CAGATTATAGTAGTGGGAGACGCAACGAAGGTGACAGTCAGAACAATTCGTATAATAGGGATATGAACTCTATATACCAAGAGCAAAGAGTACAGCCATG CCACCTCAGTTCTTCAATCTATTATGGTGGCCAAGATAATGTTTATCATCATCCTCAAAGTAACCAGAGCACTACCACCTACTCAACTTGCATGGAGGGG GTCTGGAAGATCTTGTGGTGCAAAGAGGAAGCAGAAAGAAAGAATTTGACAGAGGAAGCATTGCACCACCTGAAAACACTCGAAGATCAGCTCAAAGGCA AGAGATTCTTCGGTGGAGAAGCAATTGGGATAGTAGACATAGCATGCAACTTCTTTGGGTTCTGGATTGGAGTTATACAGGAGGTTACTGGGATGGAGGA GATGCTAGTTACAAAGGACAATTTCCTAGTACTCTGCAACTGGATTGATGTGTTCGTCGAGCATAGTGCGGTGAAGGAGACTCTTCCTCCGAAGGACAAG CTCTTCGTCGCCTTCAAAGCTCGCCTTGGCGCCCTAGCTTGGAAGTACTAA
AA sequence Show only first row Show all	>Lus10017209 pacid=23165828 polypeptide=Lus10017209 locus=Lus10017209.g ID=Lus10017209.BGIv1.0 annot-version=v1.0 MSVTGDCVLGRESLRPEKDDPTHQPWSTAKLGAPDYSSGRRNEGDSQNNSYNRDMNSIYQEQRVQPCHLSSSIYYGGQDNVYHHPQSNQSTTTYSTCMEG VWKILWCKEEAERKNLTEEALHHLKTLEDQLKGKRFFGGEAIGIVDIACNFFGFWIGVIQEVTGMEEMLVTKDNFLVLCNWIDVFVEHSAVKETLPPKDK LFVAFKARLGALAWKY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	0	1
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	1.4	0.9633
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	2.0	0.9475
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	3.2	0.8942
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	3.5	0.9029
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	4.6	0.9056
AT3G12150			unknown protein		Lus10023826 [exp]	5.6	0.8250
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10004130 [exp]	6.9	0.8650
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	7.2	0.8312
AT1G24160			unknown protein		Lus10029213 [exp]	8.2	0.8218
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	8.8	0.8816

Compare expression of checked genes

Lus10017209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.